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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55650.1
DDBJ      :             putative short chain dehydrogenase
Swiss-Prot:             

Homologs  Archaea  2/68 : Bacteria  290/915 : Eukaryota  91/199 : Viruses  0/175   --->[See Alignment]
c.2.1
:284 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   6->47 1bdbA PDBj 3e-04 43.9 %
:BLT:PDB   19->258 2dknA PDBj 5e-46 43.6 %
:RPS:PDB   6->243 1a9zA PDBj 3e-16 14.5 %
:RPS:SCOP  1->257 1fjhA  c.2.1.2 * 8e-43 38.8 %
:HMM:SCOP  1->261 1fjhA_ c.2.1.2 * 1.4e-41 32.3 %
:RPS:PFM   6->43 PF00106 * adh_short 4e-04 50.0 %
:HMM:PFM   2->120 PF00106 * adh_short 1.2e-07 32.2 115/167  
:BLT:SWISS 6->251 TRNH_DATST 1e-15 32.4 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55650.1 GT:GENE BAD55650.1 GT:PRODUCT putative short chain dehydrogenase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 873485..874339 GB:FROM 873485 GB:TO 874339 GB:DIRECTION + GB:PRODUCT putative short chain dehydrogenase GB:PROTEIN_ID BAD55650.1 LENGTH 284 SQ:AASEQ MGVYAVTGAASGMGRAVAEKLRAEGHRVIGVDLRDCEVVADLATPAGRRSAVTGVLAAADGRLDGAVLAAGLGPVPDPSRLPVIAAVNYLGVVELLEGWHGALAASGAARVVVFGSNSSTTVPGVPARTIRAFLAGDTDKAVRTVKIFGKNAAPFVYAGSKIAVSRWARRHAVTREWAGAGIRLNVIAPGAIRTPLLERQLATPAEAKAIKSFPVPTGGFGEPDHIADWVLMMLSPAAEFLCGSVVFVDGGSDAYLRADDWPRPVPLRQIGSYLRKFRGFRASR GT:EXON 1|1-284:0| BL:SWS:NREP 1 BL:SWS:REP 6->251|TRNH_DATST|1e-15|32.4|216/268| BL:PDB:NREP 2 BL:PDB:REP 6->47|1bdbA|3e-04|43.9|41/267| BL:PDB:REP 19->258|2dknA|5e-46|43.6|234/254| RP:PDB:NREP 1 RP:PDB:REP 6->243|1a9zA|3e-16|14.5|207/338| RP:PFM:NREP 1 RP:PFM:REP 6->43|PF00106|4e-04|50.0|38/169|adh_short| HM:PFM:NREP 1 HM:PFM:REP 2->120|PF00106|1.2e-07|32.2|115/167|adh_short| GO:PFM:NREP 2 GO:PFM GO:0008152|"GO:metabolic process"|PF00106|IPR002198| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00106|IPR002198| RP:SCP:NREP 1 RP:SCP:REP 1->257|1fjhA|8e-43|38.8|232/236|c.2.1.2| HM:SCP:REP 1->261|1fjhA_|1.4e-41|32.3|257/0|c.2.1.2|1/1|NAD(P)-binding Rossmann-fold domains| OP:NHOMO 810 OP:NHOMOORG 383 OP:PATTERN -------------------------------1----------------------------------1- -22-4--2---1--463----3--33-----25344447B14-72742-2--5121-1--124-3134311--------11-1---------------------1313--------------------1-------2---1----11--1---------------1-2121-------------1-22---2-1111111111111-111----11111111111-------2111111-1--111--1----21-1--1-1-111----1---1---------------------------------------------------------1------------------31---11----1--1----3-----4111-----11743---14333----------1-22342712544-544-124745334C12-3123433--2111111111331-321-------------------------------27-1211-3422335-222233672222115182452---11222-1-371241------------------11-----------------1--2--2-----12-------------------------------1--1---1--------2------2------------------112-1--------------------1-----------11-11------------------------------------------------------1112---------------------1---2-3332-1141-12-1342---------1-1--------1---2--1111---11-1--------11-----------------------------------------2-232--- ------1---------3111-1-43322222222211211222-11--31222411-11112-------1-----------111-----1243232---1--1-2---1-------21----1----1-9B3-221----2--1--1---1------12-------1----1111-1117--111-53319---1---1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 284 STR:RPRED 100.0 SQ:SECSTR TGEEEEETTTcHHHHHHHHHHHHTTcEEEEEEcTcccEEEEccTTcHHHHHHHHHHTTccEEEEccccccHHHHHHcHHHHHHHHHHHHHHHHHTccEEEEEEEGGGGcccccccccTTccccccccccHHHHHHHccEEEEEEccTTcccTTcHHHHHHHHHHHHHHHHHHHHHHcTTcEEEEEEEcEEEcccTTTcccccccccccccHHHHHHHHHTTccccEEEEcccccccccccEEccTTHHHHHGGGcccHHTTccccEEEEEEEcEEEETTcTTcH DISOP:02AL 282-284| PSIPRED cEEEEEEccccHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccHHEEEEccccHHHHHHHHHHHHcccccHHEEEEHHHHHHHHHHHHHHHHHHHHHcccEEEEEHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEcccccccHHHHHHHcccHHHHHHHHHcccccccccHHHHHHHHHHHccHHHcccccEEEEEcccEEcccccccccccccHHHHHHHHHHHHcccccc //