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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55708.1
DDBJ      :             hypothetical protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  27/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
d.92.1
:479 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   75->199 1eb6A PDBj 5e-06 18.0 %
:RPS:SCOP  75->199 1eb6A  d.92.1.12 * 2e-06 18.0 %
:HMM:SCOP  29->199 8tlnE_ d.92.1.2 * 6.7e-07 20.9 %
:RPS:PFM   50->262 PF04228 * Zn_peptidase 1e-07 29.4 %
:HMM:PFM   133->258 PF04228 * Zn_peptidase 4.2e-06 32.2 121/292  
:BLT:SWISS 129->262 Y2605_MYCBO 8e-04 28.4 %
:PROS 163->172|PS00142|ZINC_PROTEASE

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55708.1 GT:GENE BAD55708.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(961530..962969) GB:FROM 961530 GB:TO 962969 GB:DIRECTION - GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAD55708.1 LENGTH 479 SQ:AASEQ MAKLRARVFLTVAVCAIALLTGCTREVDGRAVSVYDDPFKVAGLPTTSGPSGPRSGVPDSTLTAIDGDGGEIDTLALNAIDDIQSYWRTEYPRAFGGEFTPVERLVSWSAKESRADAAEFCKESTYRLVNAAYCRLDTSIGWDRAVLLPTMAETFGQMAVVMVLAHEYGHAIQDQAEIVDPKDPVIVKEQQADCFAGAFIRHVAEGKSAHFTINTSDGLNSVLAATVAIRDSDPDDPESVHGSAFERVTAVQIGFTDGPQACKNIDIDEINQRRGNLPQTLGGTDGEYPIDKESLIELSKALAAILPVPDSPTYVYSGAGIDCRDGVTTAPVSYCPSDNTIATDIPLLAERGTADVDETDPLPLKVTGDYNGYVVFIARYTLAVQYSHGQSLTGAKTGLRAACLAGVVTGKLADPNRQRSQGNISLAAGDLDEAVSGLLTDGLAASDVQGKTVPSGFSRVDAFRAGVLYGENTCMSRYS GT:EXON 1|1-479:0| BL:SWS:NREP 1 BL:SWS:REP 129->262|Y2605_MYCBO|8e-04|28.4|134/293| PROS 163->172|PS00142|ZINC_PROTEASE|PDOC00129| RP:PDB:NREP 1 RP:PDB:REP 75->199|1eb6A|5e-06|18.0|122/177| RP:PFM:NREP 1 RP:PFM:REP 50->262|PF04228|1e-07|29.4|197/263|Zn_peptidase| HM:PFM:NREP 1 HM:PFM:REP 133->258|PF04228|4.2e-06|32.2|121/292|Zn_peptidase| RP:SCP:NREP 1 RP:SCP:REP 75->199|1eb6A|2e-06|18.0|122/177|d.92.1.12| HM:SCP:REP 29->199|8tlnE_|6.7e-07|20.9|148/0|d.92.1.2|1/1|Metalloproteases ("zincins"), catalytic domain| OP:NHOMO 30 OP:NHOMOORG 27 OP:PATTERN -------------------------------------------------------------------- --------------21111-11--1211111111111111------1-----------------211-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 195 STR:RPRED 40.7 SQ:SECSTR ##########################################################################HHHHHHHHHHHcHHHHH###HcccHHHHHHHHHHHTcccccccEEEccccccTTccEEEEGGGTEEEEcHHHHcccccccTTcccHHHHHHHHHHTcTTTccccccHHHHHTccHHHHHTcHHHHcccccccTTTTHHHHHHH#HHHHHHHHHHHHHHH#HHHccccccccccccHHHHHHHHHHHHTcEEEcHHHHHHH############################################################################################################################################################################################################# DISOP:02AL 1-3, 43-68, 239-241| PSIPRED cccHHHHHHHHHHHHHHHHHHcccEEEEEEEEEEEcccHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEcEEEEEEEEccccccccccccccccccccccEEcccccEEEEEHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHcccccccEEEEcccccccccccccccccccccccEEEEEHHHHHHHHHHHccccccccEEEEEccccEEEEEEHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEccHHHHHHHHHHHHHHHHHcccEEccccHHHHHHHHccccccccccccccc //