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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55723.1
DDBJ      :             hypothetical protein
Swiss-Prot:             

Homologs  Archaea  18/68 : Bacteria  464/915 : Eukaryota  38/199 : Viruses  0/175   --->[See Alignment]
c.104.1c.72.1
:487 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   113->420 2ax3A PDBj 4e-28 34.4 %
:RPS:PDB   12->422 2ax3A PDBj 9e-45 26.9 %
:RPS:SCOP  38->198 2ax3A2  c.104.1.1 * 4e-28 29.8 %
:RPS:SCOP  228->419 1kyhA  c.72.1.4 * 6e-13 28.3 %
:HMM:SCOP  5->233 1jztA_ c.104.1.1 * 6e-50 37.3 %
:HMM:SCOP  206->475 1kyhA_ c.72.1.4 * 5.3e-55 42.0 %
:RPS:PFM   27->181 PF03853 * YjeF_N 7e-19 45.8 %
:RPS:PFM   236->423 PF01256 * Carb_kinase 9e-22 42.8 %
:HMM:PFM   235->453 PF01256 * Carb_kinase 1.2e-59 41.7 216/242  
:HMM:PFM   30->181 PF03853 * YjeF_N 2.4e-37 43.2 148/173  
:BLT:SWISS 4->420 Y373_MYCLE e-101 50.2 %
:PROS 409->419|PS01050|YJEF_C_2
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55723.1 GT:GENE BAD55723.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 979220..980683 GB:FROM 979220 GB:TO 980683 GB:DIRECTION + GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAD55723.1 LENGTH 487 SQ:AASEQ MSGRHGYFTADEVRAAEAELFTRVPAGVPMQRAAHGLARVVAEELRERTGGIAGRAVTLLVGSGDNGGDALWAGAKLRARGVAVTAVLLDPDRAHRAGLAALRRAGGRVRTDLGEPDLVVDGIVGISGRGPLRPAAARLVAEVDAPIVAADLPSGVDPDTGAVTGPAVRAEVTVTFGAYKPVHVLAAPWCGRIELVDIGLRLPEPRLAALAPALIGAAWPVPGPADDKYTQGVTGICAGSATYPGAAVLCTGGAVAATSGMVRYAGTGAEQVLARFPEVIAAPDVRASGRVQAWVVGPGAGTDAAARERLAEILATDLPVVVDADGLTLLARDPDLVRGRAAATVLTPHAGEFARLTGRPVGDDRVGAVRELAESWGATVLLKGRATLVAQPGRRVLVNEAGGSWAATAGAGDVLSGVIGALLAAGRDPAWSAAAAARAHALAAALAAHDRGPVGAPVSASPLLHQLPAAIRTLRALGEVGAEPHPA GT:EXON 1|1-487:0| BL:SWS:NREP 1 BL:SWS:REP 4->420|Y373_MYCLE|e-101|50.2|414/473| PROS 409->419|PS01050|YJEF_C_2|PDOC00806| SEG 93->108|rahraglaalrraggr| SEG 199->218|glrlpeprlaalapaligaa| SEG 304->315|aaarerlaeila| SEG 401->412|aggswaatagag| SEG 424->453|aagrdpawsaaaaarahalaaalaahdrgp| BL:PDB:NREP 1 BL:PDB:REP 113->420|2ax3A|4e-28|34.4|302/484| RP:PDB:NREP 1 RP:PDB:REP 12->422|2ax3A|9e-45|26.9|402/484| RP:PFM:NREP 2 RP:PFM:REP 27->181|PF03853|7e-19|45.8|155/173|YjeF_N| RP:PFM:REP 236->423|PF01256|9e-22|42.8|187/244|Carb_kinase| HM:PFM:NREP 2 HM:PFM:REP 235->453|PF01256|1.2e-59|41.7|216/242|Carb_kinase| HM:PFM:REP 30->181|PF03853|2.4e-37|43.2|148/173|YjeF_N| RP:SCP:NREP 2 RP:SCP:REP 38->198|2ax3A2|4e-28|29.8|161/211|c.104.1.1| RP:SCP:REP 228->419|1kyhA|6e-13|28.3|187/268|c.72.1.4| HM:SCP:REP 5->233|1jztA_|6e-50|37.3|220/243|c.104.1.1|1/1|YjeF N-terminal domain-like| HM:SCP:REP 206->475|1kyhA_|5.3e-55|42.0|262/0|c.72.1.4|1/1|Ribokinase-like| OP:NHOMO 549 OP:NHOMOORG 520 OP:PATTERN 111111----------11-----1-----1----1----------1--------111----1-11--- 11-1111111111111111-11111111111111111111111111-11111111111--111111111111111111----11-111-----1---------1111111---------------11---1-1-1--11--1111-11111111111--11--11111111----11--------1-------1---------------1-11-----111--11-------------------------------------------------1---------------------------------------------------11111111111-111111111111-1-111111-11111-11--1-1-111--1-----111111111111111111111111-21112-11--1-111111111111-1111----------1111111111111-1-1111-111----------------------12111-1111-------------11--------------11---11---1---1-1111111-112111111111-1111-11-111----111111111----1111-1-------------------------1-1111111-111111--111111111111-------------11111111111111111-111111111111111111111111--111-1111111111111111-1111---11111111111---111111--1-1-1-2--------------------------11111--1-11111-111-11-111111---11111111-11-1-1111111------1--------------------------------------------111-1111111- --------1-----1---------------------------------11----1-------1---------------------------------------11---1--1-----11---11112-113A1-224----3111--------1--11-1----11-------1------5-----1------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 420 STR:RPRED 86.2 SQ:SECSTR ###ccccHHHHccHHHHHHHHHTTccHHHHHHHHHHHHHHHHHHHccHHcccTTcEEEEEEcccHHHHHHHHHHHHHTTTccEEEEEEccccccHHHHHHHHHHHHTTccEGGGGccEEEEEcccTTccccccHHHHHHHHHHccEEEEEcccTTccTTTcccccccccccEEEEEccccHHHHcHHHHHcEEEEEcccHHHHTTccEEEccHHHHHHcccccccccGGGGcEEEEEccccccccHHHHHHHHHHHTTccEEEEETTTTHHHHHHcTTcEEEEHHHHHHTccEEEEcTTccccHHHHHHHHHHHHHcccEEEcHHHHHTcHHcHHHHHTccccEEEcccHHHHHHHTccHHHTTcHHHHHHHHHHHTcEEEEccccEEEEEccccEEEEcccccccccTTHHHHHHHHHHHHH################################################################ DISOP:02AL 1-2, 480-487| PSIPRED cccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEEccccHHHHHHHHHHHHHccccEEEEEEccccHHHHHHHHHHHcccccccccccccEEEEEEEcccccccccHHHHHHHHHHcccEEEEEccccccccccccccccccccEEEEEHHHHHHHHccHHHccEEEEEEcccccHHHHHHcccHHHHHHHccccccccccccccEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHccccHHHHHHHHHHccccEEEEcccccccHHHHHHHHHHHHccccEEEEccHHHHHHccHHHHccccccEEEcccHHHHHHHccccccccHHHHHHHHHHHHccEEEEEcccEEEEEcccEEEEEcccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHcccccccccc //