Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55730.1
DDBJ : hypothetical protein
Swiss-Prot:
Homologs Archaea 0/68 : Bacteria 54/915 : Eukaryota 0/199 : Viruses 0/175 --->[See Alignment]
c.55.1
:513 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB 98->287 2v7yA PDBj 1e-06 33.2 %
:RPS:PDB 95->315 1e4gT PDBj 7e-18 15.5 %
:RPS:SCOP 143->310 1jceA2 c.55.1.1 * 9e-18 25.8 %
:HMM:SCOP 137->313 1bupA2 c.55.1.1 * 3e-23 28.8 %
:RPS:PFM 85->309 PF00012 * HSP70 8e-10 28.9 %
:HMM:PFM 120->314 PF00012 * HSP70 5e-16 30.9 191/602
:BLT:SWISS 98->310 HSCA_RALEJ 2e-13 30.8 %
:PROS 384->395|PS00178|AA_TRNA_LIGASE_I
:TM
:SEG
SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55730.1
GT:GENE BAD55730.1
GT:PRODUCT hypothetical protein
GT:DATABASE GIB00210CH01
GT:ORG nfar0
GB:ACCESSION GIB00210CH01
GB:LOCATION complement(986171..987712)
GB:FROM 986171
GB:TO 987712
GB:DIRECTION -
GB:PRODUCT hypothetical protein
GB:PROTEIN_ID BAD55730.1
LENGTH 513
SQ:AASEQ MRTSLGISAGNEVVCSALVATAPNGAQSFDYRVVSADAAHSDIGDLVASSIDLMTTQLPARQVPHDVAWPAHPIGVGGEGGLGLQAAASKPPTSVAVAYRSREQAQVIRSATGRQRELELVHEATAALTYLRHTGLTDRYGTVAVVDLGATGLSVSVAEQADGTLLHTQRTHAISGNAIDDLIYHHLVDLHFARRGTRPNRAMLVNRGRAAKEHLSIAPAVTIDHVAGQPLKLTRSDFEVLIADLLADTAAYVSGAFARSPRAPEAVAVIGGGANIPAVVETLRRSLDVPVLTVDDPEAVIAKGAALVADAAQPATLPVGAMGAESSVSTFTKVAGTLVGAVVVVGLIIGYGVKTLAPTADDEVSPAGTTSGTRLPGAPVAVVPTTAPAPTAGGITTLAPPTSAAPTTTERTGVPSTTGSPVAPTTAPSTTPTLRPDPNLPPIPFPELLGPLLDRNAPQEQNSEPPLSEQPDAGSPPVTTSPSTTAPTPTQAPAQSRVPFPRAGSGSASGNTE
GT:EXON 1|1-513:0|
BL:SWS:NREP 1
BL:SWS:REP 98->310|HSCA_RALEJ|2e-13|30.8|211/621|
PROS 384->395|PS00178|AA_TRNA_LIGASE_I|PDOC00161|
TM:NTM 1
TM:REGION 334->356|
SEG 75->84|gvggegglgl|
SEG 332->354|tkvagtlvgavvvvgliigygvk|
SEG 376->409|pgapvavvpttapaptaggittlapptsaapttt|
SEG 414->433|vpsttgspvapttapsttpt|
SEG 475->496|sppvttspsttaptptqapaqs|
BL:PDB:NREP 1
BL:PDB:REP 98->287|2v7yA|1e-06|33.2|184/504|
RP:PDB:NREP 1
RP:PDB:REP 95->315|1e4gT|7e-18|15.5|207/375|
RP:PFM:NREP 1
RP:PFM:REP 85->309|PF00012|8e-10|28.9|225/488|HSP70|
HM:PFM:NREP 1
HM:PFM:REP 120->314|PF00012|5e-16|30.9|191/602|HSP70|
RP:SCP:NREP 1
RP:SCP:REP 143->310|1jceA2|9e-18|25.8|163/196|c.55.1.1|
HM:SCP:REP 137->313|1bupA2|3e-23|28.8|177/193|c.55.1.1|1/1|Actin-like ATPase domain|
OP:NHOMO 69
OP:NHOMOORG 54
OP:PATTERN -------------------------------------------------------------------- --------------21111-11--1311111-12222245----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------11-1-----------1-------------------------------------------------------------------------------------------------------------------------------------------------------------------1111----1--------------11------------------------------------------------------------------------------------1-------1-----11---1-1--------------1-------------1--------------------------------1---1---1-11-1---111-------1-----11-------------------------------------------1------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
STR:NPRED 323
STR:RPRED 63.0
SQ:SECSTR ccccEEEEEcccEEEEEEEEEcccccccEEcccccEEccHHHHHHHHHHHHHHHEEHHTTEEEEEEEEEEEEETTTEEEcccTTcEEcEEEEEEEEEEEHHHHHHHHHHHTTccccEEEEEEHHHHHHHHHccHHHHHHcEEEEEEEcccccEEEEEEETTEEEEEEEEcEcccccHHHHHHHHHHccccHHHHHHHHHHHccHHHHHHHcccTTccccEEEEEcTTccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTcccccEEEEcGGGGcTTHHHHHHHHHcccEEEcccTTccccccccccccTTcGGEEcccccc##############################################################################################################################################################################################
DISOP:02AL 1-7, 355-425, 435-513|
PSIPRED ccccccccccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcHHHHccccccccccEEEEEcccccHHHHHHHHHHHHccccEEEEcHHHHHHHHHHHccccccccEEEEEEEcccEEEEEEEEEcccEEEEccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccEEEEccccccEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHccccHHEEEEEccccHHHHHHHHHHHHHcccccccccHHHEEEcccEEEEccccccccccHHcccccccccccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
//
[GTOP]
