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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55734.1
DDBJ      :             putative sigma factor
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  217/915 : Eukaryota  3/199 : Viruses  0/175   --->[See Alignment]
a.177.1a.4.1a.4.13
:191 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   26->188 2q1zA PDBj 6e-21 33.3 %
:RPS:PDB   11->188 3dxjF PDBj 1e-16 9.0 %
:RPS:SCOP  9->100 1iw7F3  a.177.1.1 * 5e-14 10.9 %
:RPS:SCOP  138->189 1k78A1  a.4.1.5 * 2e-06 17.3 %
:HMM:SCOP  7->120 1or7A2 a.177.1.1 * 1.8e-18 31.2 %
:HMM:SCOP  99->188 1iw7F2 a.4.13.2 * 3.4e-13 23.3 %
:RPS:PFM   33->97 PF04542 * Sigma70_r2 1e-07 38.5 %
:RPS:PFM   137->184 PF08281 * Sigma70_r4_2 2e-04 41.7 %
:HMM:PFM   33->100 PF04542 * Sigma70_r2 6.5e-17 32.4 68/71  
:HMM:PFM   138->186 PF04545 * Sigma70_r4 1.1e-15 30.6 49/50  
:BLT:SWISS 14->190 SIGK_MYCVP 1e-51 64.4 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55734.1 GT:GENE BAD55734.1 GT:PRODUCT putative sigma factor GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(990854..991429) GB:FROM 990854 GB:TO 991429 GB:DIRECTION - GB:PRODUCT putative sigma factor GB:PROTEIN_ID BAD55734.1 LENGTH 191 SQ:AASEQ MTQNGASRAAESIELAALLHRCGRADQHAFAELYDRTSARVFGLVLRVLQDPGYAEETTQEVYLQIWRTAASFDPDRGSAMTWLMTLAHRRAVDRVRAEQAHSSREAAYGARVLDNEFDEVVEEVERRAEQHAVRASLAELTDTQREAISLAYYGGRTYAEVAAHLGVGLPTVKSRIRDGLTRLKKSLGVT GT:EXON 1|1-191:0| BL:SWS:NREP 1 BL:SWS:REP 14->190|SIGK_MYCVP|1e-51|64.4|177/196| SEG 120->136|evveeverraeqhavra| BL:PDB:NREP 1 BL:PDB:REP 26->188|2q1zA|6e-21|33.3|159/176| RP:PDB:NREP 1 RP:PDB:REP 11->188|3dxjF|1e-16|9.0|178/349| RP:PFM:NREP 2 RP:PFM:REP 33->97|PF04542|1e-07|38.5|65/70|Sigma70_r2| RP:PFM:REP 137->184|PF08281|2e-04|41.7|48/54|Sigma70_r4_2| HM:PFM:NREP 2 HM:PFM:REP 33->100|PF04542|6.5e-17|32.4|68/71|Sigma70_r2| HM:PFM:REP 138->186|PF04545|1.1e-15|30.6|49/50|Sigma70_r4| GO:PFM:NREP 10 GO:PFM GO:0003677|"GO:DNA binding"|PF04542|IPR007627| GO:PFM GO:0003700|"GO:transcription factor activity"|PF04542|IPR007627| GO:PFM GO:0006352|"GO:transcription initiation"|PF04542|IPR007627| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF04542|IPR007627| GO:PFM GO:0016987|"GO:sigma factor activity"|PF04542|IPR007627| GO:PFM GO:0003677|"GO:DNA binding"|PF08281|IPR013249| GO:PFM GO:0003700|"GO:transcription factor activity"|PF08281|IPR013249| GO:PFM GO:0006352|"GO:transcription initiation"|PF08281|IPR013249| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF08281|IPR013249| GO:PFM GO:0016987|"GO:sigma factor activity"|PF08281|IPR013249| RP:SCP:NREP 2 RP:SCP:REP 9->100|1iw7F3|5e-14|10.9|92/184|a.177.1.1| RP:SCP:REP 138->189|1k78A1|2e-06|17.3|52/63|a.4.1.5| HM:SCP:REP 7->120|1or7A2|1.8e-18|31.2|112/113|a.177.1.1|1/1|Sigma2 domain of RNA polymerase sigma factors| HM:SCP:REP 99->188|1iw7F2|3.4e-13|23.3|90/105|a.4.13.2|1/1|Sigma3 and sigma4 domains of RNA polymerase sigma factors| OP:NHOMO 349 OP:NHOMOORG 220 OP:PATTERN -------------------------------------------------------------------- 3431411----3112--11-11--111111112111413411-221---211122--1----2-3-1464------------2-------1----------1-13213-3--------------------------22232---342--1---2111-------1-4-1--------------1-------1------------------1--2--------111------21----------------------------------------------------------------------------------------------------------------------1---------------------2---111------135522132433----------1-12-11-11-32-1222121211--221-112-1122121--------1-----1-------------------------------2-1-------------2----112-------121-111--221121--211---121---1---------------------1---------------------1--1---------------------------11-1121-13-11111-2-211-11----1---1--1-----------------------------------------------------------------------------1--------------1-----------312--------------------------------21311-11-222-----------11------1----1111111111----------1111-----------------------------------------------2- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1----------1-----1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 182 STR:RPRED 95.3 SQ:SECSTR ######cccHTccHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHGGGccccccHHHHHHHHHHHHHHHHHcccTTccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcTTccHHHHHHHHHHTcccccTTcccTTcccccGGGTccccccccHHHHH### DISOP:02AL 1-12| PSIPRED ccccccccccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHccccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccc //