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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55745.1
DDBJ      :             hypothetical protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  15/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
:570 amino acids
:PSIPRED
:DISOPRED
:RPS:PFM   32->85 PF04024 * PspC 4e-07 40.7 %
:HMM:PFM   29->85 PF04024 * PspC 1.4e-17 29.8 57/61  
:HMM:PFM   488->536 PF09922 * DUF2154 2.7e-05 26.5 49/233  
:HMM:PFM   72->123 PF11700 * ATG22 0.00038 29.2 48/477  
:BLT:SWISS 32->105 PSPC_SHIFL 9e-05 36.6 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55745.1 GT:GENE BAD55745.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1001228..1002940) GB:FROM 1001228 GB:TO 1002940 GB:DIRECTION - GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAD55745.1 LENGTH 570 SQ:AASEQ MRWRSCALTMENMTRTTFGDQLQQMWQTRPVRLPRQGPIAGVAAGFGQRYNVDPVLIRVAFVVSSMFGGAGIVLYLFAWLMLSEAGERSSPAESLFGKGHSSQSQTKTVVLIVALAIAVTTVGPIGVGLAGSGMISLALMLAGWWMLFMRCPQPPPGTSLWDAGYPGGTATGYPGTAFPTGPMRTTGGFPMAQATHTTPMYTPYTKLPDTYIPDDRADAPTVELHKRTASTGTTGAAATTADSPAQAADPTGATAAESGAAARSEQQTSSPPAQASESAAVPEPTATGRPATGSDTDEAAPVVATTPDTTALDTPGRGTGHESGSGAAAPRPTPSTRAAAPPPVLAGPVPPSWDPLGVAPLAWDLPEPTPARPVVAPPPKRPRSRLTPVVLGLAIMAAAGAGALAAAGVEWMTPGRIGAVALAVIGLGLVLGAFLRRGYGLLVVTAPLAGFVLLASLIGPIEFDRGAMGEHVWAPPTAAELRSDYRVTMGSGTLDLRSIELTENRTVNLDVQMGEARILVPAGMTVHTDCSVRMGENLCPEGITGPNTPGAPVLDLNVDVRMGSVEVQRG GT:EXON 1|1-570:0| BL:SWS:NREP 1 BL:SWS:REP 32->105|PSPC_SHIFL|9e-05|36.6|71/119| TM:NTM 7 TM:REGION 64->86| TM:REGION 108->130| TM:REGION 133->155| TM:REGION 341->363| TM:REGION 387->409| TM:REGION 414->435| TM:REGION 440->462| SEG 108->122|tvvlivalaiavttv| SEG 163->182|agypggtatgypgtafptgp| SEG 228->284|tastgttgaaattadspaqaadptgataaesgaaarseqqtssppaqasesaavpep| SEG 299->315|aapvvattpdttaldtp| SEG 324->351|gsgaaaprptpstraaapppvlagpvpp| SEG 366->385|peptparpvvapppkrprsr| SEG 391->408|lglaimaaagagalaaag| SEG 417->433|igavalaviglglvlga| RP:PFM:NREP 1 RP:PFM:REP 32->85|PF04024|4e-07|40.7|54/62|PspC| HM:PFM:NREP 3 HM:PFM:REP 29->85|PF04024|1.4e-17|29.8|57/61|PspC| HM:PFM:REP 488->536|PF09922|2.7e-05|26.5|49/233|DUF2154| HM:PFM:REP 72->123|PF11700|0.00038|29.2|48/477|ATG22| OP:NHOMO 15 OP:NHOMOORG 15 OP:PATTERN -------------------------------------------------------------------- ------11111---1---------------------1111--------------------11--11--1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 1-4, 149-413, 568-570| PSIPRED cccHHEEEEHHHHHHHHHHHHHHHHHHHccccccccccEEEEEccccEEEEccEEEEEEEEEEEEEEccHHHHHHHHHHHHHHccccccccHHHHccccccccccccEEEEEEEEEcccccccccHHHcccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccEEEEEccHHHHHHHHHccccEEcccccccccccccccHHHHccccEEEEEEEEEEEEEEEEccccEEEEEEEccEEEEEcccccEEEEEEEEEcccEEccccccccccccccEEEEEEEccccEEEEEcc //