[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55751.1
DDBJ      :             hypothetical protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  45/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
e.8.1
:525 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   69->340 3bq0A PDBj 2e-13 13.9 %
:RPS:SCOP  69->206 1im4A  e.8.1.7 * 2e-07 15.3 %
:HMM:SCOP  9->239 1k1sA2 e.8.1.7 * 2.4e-37 30.5 %
:HMM:PFM   32->155 PF00817 * IMS 1.7e-17 27.4 124/150  
:HMM:PFM   216->317 PF11799 * IMS_C 0.00018 17.8 101/135  
:BLT:SWISS 159->225 IMUB_CAUCR 8e-05 45.8 %
:BLT:SWISS 345->443 GLMM_METKA 2e-04 36.7 %
:BLT:SWISS 416->459 STAT2_MOUSE 5e-04 45.5 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55751.1 GT:GENE BAD55751.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1008179..1009756 GB:FROM 1008179 GB:TO 1009756 GB:DIRECTION + GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAD55751.1 LENGTH 525 SQ:AASEQ MTPAAARASRVLAVWCRDWPAVAAAAVAEVPPTRPVAVLSANRVTACSATARVAGVRRGLRRREAQARCPELHLAQSDPDRDARLFEPVVAAVDATVPGVEVLRPGLLVLGARGAARFFGSEEAAAERLVDAVAAVGVEAQVGIADEVFTAVIAARHGAVVAPGAGADFLAPLPVAELAVEPSLAAPERADLVDLLHRLGLRRVGDFAALRPAEVGSRFGADAVLAHRSARALPERPPSARRPAPDLVVEHRCDPPIDRVDAAAFAGRLLATELHGALAAASLACTRLAVHAETEAGEQLSRTWRCAQPLTPADTADRVRWQLDGWLTRGDRPSAPVTLLRLEPVEVVRAGALQLGLWGGVGEEDERARRALVRVQGLLGGEAVRVGVLSGGRGPAERVTLVVLGDERVPAADPDQPWPGRLPEPAPAVLLTPRPQVRLLAADGAPVEITPRGLFTADPVHLHWESRSWRLTGWAGPWPVDEHWWAPGGSAALAARAQVRITDSQDRVLLLGYRDGVWEAEGVYG GT:EXON 1|1-525:0| BL:SWS:NREP 3 BL:SWS:REP 159->225|IMUB_CAUCR|8e-05|45.8|59/458| BL:SWS:REP 345->443|GLMM_METKA|2e-04|36.7|98/452| BL:SWS:REP 416->459|STAT2_MOUSE|5e-04|45.5|44/923| SEG 20->38|pavaaaavaevpptrpvav| SEG 49->68|atarvagvrrglrrreaqar| SEG 122->145|eeaaaerlvdavaavgveaqvgia| SEG 228->245|rsaralperppsarrpap| SEG 486->497|apggsaalaara| RP:PDB:NREP 1 RP:PDB:REP 69->340|3bq0A|2e-13|13.9|259/341| HM:PFM:NREP 2 HM:PFM:REP 32->155|PF00817|1.7e-17|27.4|124/150|IMS| HM:PFM:REP 216->317|PF11799|0.00018|17.8|101/135|IMS_C| RP:SCP:NREP 1 RP:SCP:REP 69->206|1im4A|2e-07|15.3|131/205|e.8.1.7| HM:SCP:REP 9->239|1k1sA2|2.4e-37|30.5|223/0|e.8.1.7|1/1|DNA/RNA polymerases| OP:NHOMO 45 OP:NHOMOORG 45 OP:PATTERN -------------------------------------------------------------------- ----111111111111111-11--111111111111111111---11-1-----------1111--1-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------11------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 269 STR:RPRED 51.2 SQ:SECSTR ####################################################################cTTcEEEEccHHHHHHHHHHHHHHHHTTccEEEEEETTEEEEEcTTTTTTcHHHHHHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHTTEEccGGGHHHHHHHcccTTcTccHHHH####HHHHHHHTTTTcccGGGGGGccHHHHHHHHcHHHHHHHHHHHTTccccccccEEcccEEEEEEEEEEEccHHHHHHHHHHHHHHHHHHHTTTccEEEEEEEEEEETTccEEEEEEEccccccHHHHHHHHHHHHHHHTTc#HcccccEEEEEE####################################################################################################################################################################################### DISOP:02AL 1-7, 240-246, 351-367, 413-421| PSIPRED ccccccccccEEEEEccccHHHHHcccccccccccEEEEcccEEEEccHHHHHHccccccHHHHHHHHcccEEEEcccHHHHHHHHHHHHHHHHHHcccEEEEcccEEEEEccccccccccHHHHHHHHHHHHHHcccEEEEEEcccHHHHHHHHcccccccHHHHHHHHHHccHHHHccccHHccccHHHHHHHHHHcccHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEEccccEEEEEEEcccccccHHHHHHHHHHHHHHccccccccccEEEEEEEEccccccccccccccccccccHHHHHHHHHHHHHHHccccEEEEEEcccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccEEEccHHHEEEEcccccccccccccccccccccEEEEEEEEcccccEEEEEEEcccEEEEEEEc //