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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55756.1
DDBJ      :             hypothetical protein
Swiss-Prot:             

Homologs  Archaea  5/68 : Bacteria  121/915 : Eukaryota  66/199 : Viruses  0/175   --->[See Alignment]
c.2.1
:361 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   1->26 3c1oA PDBj 6e-04 30.8 %
:RPS:PDB   3->92 2e37B PDBj 8e-04 17.8 %
:RPS:SCOP  1->104 1xq6A  c.2.1.2 * 4e-04 16.7 %
:HMM:SCOP  1->188 1e5qA1 c.2.1.3 * 9.5e-18 25.3 %
:RPS:PFM   5->147 PF03435 * Saccharop_dh 1e-06 33.1 %
:HMM:PFM   4->148 PF03435 * Saccharop_dh 5.4e-18 28.5 137/386  
:HMM:PFM   224->240 PF08815 * Nuc_rec_co-act 0.00085 58.8 17/51  
:BLT:SWISS 4->136 TAER_MYCLE 9e-19 39.1 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55756.1 GT:GENE BAD55756.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1012723..1013808 GB:FROM 1012723 GB:TO 1013808 GB:DIRECTION + GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAD55756.1 LENGTH 361 SQ:AASEQ MSKIVLFGATGYTGRLTAAELVARGAVPVLAGRDAAALAALAVELGGAPTAVADVGDPASVRALLGRGDVLVTTVGPFLRHGRPALDAAIDAGAHYIDSTGEGPFIRSVFERHDRAVATGSVLLSAFGFDYVPGNLAAGLALREAPDAARVEVGYFIDRPGTSGGTRASIAGMLFESGFALRGGALVDERAGARLRRFDVAGATRAGVSIPASEQLALPRSYPNLREIDVFLGVPELAGRGMQATSVLTAAVGHLPPLERGLRAGVTALVRGSTGGPDAASRARTRSWVTARTFDAAGLPRATVTLAGGDPYDFTARIMAWAADTVRDDGVSGTGALGPVDAFGLDPLHAACAEAGWRPAR GT:EXON 1|1-361:0| BL:SWS:NREP 1 BL:SWS:REP 4->136|TAER_MYCLE|9e-19|39.1|133/418| SEG 30->48|lagrdaaalaalavelgga| RP:PDB:NREP 2 RP:PDB:REP 1->26|3c1oA|6e-04|30.8|26/314| RP:PDB:REP 3->92|2e37B|8e-04|17.8|90/301| RP:PFM:NREP 1 RP:PFM:REP 5->147|PF03435|1e-06|33.1|136/332|Saccharop_dh| HM:PFM:NREP 2 HM:PFM:REP 4->148|PF03435|5.4e-18|28.5|137/386|Saccharop_dh| HM:PFM:REP 224->240|PF08815|0.00085|58.8|17/51|Nuc_rec_co-act| RP:SCP:NREP 1 RP:SCP:REP 1->104|1xq6A|4e-04|16.7|102/253|c.2.1.2| HM:SCP:REP 1->188|1e5qA1|9.5e-18|25.3|182/183|c.2.1.3|1/1|NAD(P)-binding Rossmann-fold domains| OP:NHOMO 232 OP:NHOMOORG 192 OP:PATTERN --------------------------1-1111------------------------------------ ----1------1-111122-21112-22222211112141-11-1---------1-1---111-111111-----------------------------------1--1---------------------------111-------1--1-------------1--1----------------1----------------------------------------1-------------------------------------------------------------------------------------------------------------------------------------------------------2--1-------11-11------1111111111------------1--------1--------1--------------------------------------------------------11-1------111111-----11--------1--------11--1---1-11---------------------------1--------------------111111--------------------------------11--11----------------------------------1------------------------------------------------------------------------------------------------11-----------------11111--111--1111-1-------------------------------1-----------------------1111------------------------------------------------- ------2-11----111111-1121--11-111111----1--1-1-111--11--1--1--------------------------------1121--1111-1-1-12---2---------2------------1----------------1-----111------414---2--1-19---212--1-11--1--22 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 92 STR:RPRED 25.5 SQ:SECSTR cccEEEETTTcTTHHHHHHHHHHTTcEEEEcccHHHHHHHHHHHHTTGGGcEEEccGGGGTTcccccHHHHHHHHHHHHHHHHHHHHHcTTc############################################################################################################################################################################################################################################################################# DISOP:02AL 272-283, 360-361| PSIPRED ccEEEEEccccHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHcccccEEEEEcccHHHHHHHHHcccEEEEcccHHHHccHHHHHHHHHHcccEEEccccHHHHHHHHHHHHHHHHcccEEEEEcccHHHHHHHHHHHHHHHccccEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHcccEEEccccccccEEEccccEEEEEEEccccEEEEEEccccccEEEEEEEccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccccccHHHHHcccEEEEEEEEEccccEEEEEEEEEcccccHHHHHHHHHHHHHHHcccccccEEccHHHHcHHHHHHHHHHccccccc //