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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55765.1
DDBJ      :             putative ribosomal RNA methyltransferase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  727/915 : Eukaryota  15/199 : Viruses  0/175   --->[See Alignment]
c.116.1
:154 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->152 3e5yA PDBj 6e-45 59.6 %
:RPS:PDB   1->153 3e5yA PDBj 2e-31 56.2 %
:RPS:SCOP  1->154 1j85A  c.116.1.1 * 1e-38 49.4 %
:HMM:SCOP  1->156 1mxiA_ c.116.1.1 * 5.4e-41 39.1 %
:RPS:PFM   4->142 PF00588 * SpoU_methylase 2e-10 37.5 %
:HMM:PFM   2->142 PF00588 * SpoU_methylase 1.1e-32 30.4 138/142  
:BLT:SWISS 1->154 YIBK_ECOLI 5e-46 53.2 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55765.1 GT:GENE BAD55765.1 GT:PRODUCT putative ribosomal RNA methyltransferase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1022385..1022849) GB:FROM 1022385 GB:TO 1022849 GB:DIRECTION - GB:PRODUCT putative ribosomal RNA methyltransferase GB:PROTEIN_ID BAD55765.1 LENGTH 154 SQ:AASEQ MFHLVFHEPRIPPNTGNAIRLVAGTGCALHLIEPLGFDLSEAKLRRAGLDYHDLASVTVHESLAAAWEALAPERVYAFTTQGSTRYTDIAYRPGDVLLFGTEPTGLPAEVLADPHITDRLRIPMLPGRRSMNLSNAAAVTVYEAWRQQGFPGAI GT:EXON 1|1-154:0| BL:SWS:NREP 1 BL:SWS:REP 1->154|YIBK_ECOLI|5e-46|53.2|154/157| BL:PDB:NREP 1 BL:PDB:REP 1->152|3e5yA|6e-45|59.6|151/156| RP:PDB:NREP 1 RP:PDB:REP 1->153|3e5yA|2e-31|56.2|153/156| RP:PFM:NREP 1 RP:PFM:REP 4->142|PF00588|2e-10|37.5|136/143|SpoU_methylase| HM:PFM:NREP 1 HM:PFM:REP 2->142|PF00588|1.1e-32|30.4|138/142|SpoU_methylase| GO:PFM:NREP 3 GO:PFM GO:0003723|"GO:RNA binding"|PF00588|IPR001537| GO:PFM GO:0006396|"GO:RNA processing"|PF00588|IPR001537| GO:PFM GO:0008173|"GO:RNA methyltransferase activity"|PF00588|IPR001537| RP:SCP:NREP 1 RP:SCP:REP 1->154|1j85A|1e-38|49.4|154/156|c.116.1.1| HM:SCP:REP 1->156|1mxiA_|5.4e-41|39.1|156/156|c.116.1.1|1/1|alpha/beta knot| OP:NHOMO 750 OP:NHOMOORG 742 OP:PATTERN -------------------------------------------------------------------- -----11111111111111-111111111111111111111----11-1---111111-------11----11111111-11-------------------11-------111111111111111---------------------1111111111111111111111121111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-111111111111111111-111-1111111111111111111111111111111111-11111111111-111111111111111-1-1----------------------11-----------------------------1111111111111111111111111111111111111111111111111111111111111111111111111111111--11111111111111111111----11-111-11111111-1-------1111111111111111111111111111111111111--111-1------11111111111111111-1111111111111111111111111111111111111111111111111111-111111111111--111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11111111----------1----1-111-111111111111111----------111 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------111116111-121-2-11------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 154 STR:RPRED 100.0 SQ:SECSTR ccEEEEEccccHHHHHHHHHHHHHHTcEEEEEccccccccHHHHHHTTccHHHHHTcEEEccHHHHHHHHcccGEEEEccTTcEEGGGccccTTcEEEEEcTTTcccHHHHTTccGGGEEEcccccccccccHHHHHHHHHHHHHHHTTTTTcc DISOP:02AL 153-154| PSIPRED cEEEEEEccccccHHHHHHHHHHHccccEEEEccccccccHHHHHHHHccHHHEEEEEEEccHHHHHHHHccccEEEEEcccccccccccccccEEEEEccccccccHHHHHHcccccEEEEcccccccEEcHHHHHHHHHHHHHHHccccccc //