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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55770.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  283/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
a.24.16a.4.1c.23.16
:339 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   79->192 3er6D PDBj 2e-04 23.0 %
:BLT:PDB   227->323 1d5yA PDBj 2e-06 28.9 %
:RPS:PDB   40->232 3bhnA PDBj 1e-20 14.6 %
:RPS:PDB   227->328 1bl0A PDBj 7e-21 21.6 %
:RPS:SCOP  4->200 1j42A  c.23.16.2 * 9e-13 16.8 %
:RPS:SCOP  175->325 1v4aA1  a.24.16.4 * 7e-18 11.3 %
:HMM:SCOP  2->201 1pe0A_ c.23.16.2 * 7.9e-38 33.9 %
:HMM:SCOP  220->271 1d5yA1 a.4.1.8 * 1.9e-08 32.7 %
:HMM:SCOP  272->323 1d5yA1 a.4.1.8 * 6e-09 35.3 %
:RPS:PFM   77->144 PF01965 * DJ-1_PfpI 3e-04 42.4 %
:RPS:PFM   283->321 PF00165 * HTH_AraC 5e-05 41.0 %
:HMM:PFM   234->271 PF00165 * HTH_AraC 7e-09 26.3 38/42  
:HMM:PFM   283->322 PF00165 * HTH_AraC 2.5e-08 38.5 39/42  
:HMM:PFM   94->183 PF01965 * DJ-1_PfpI 2.1e-15 30.3 89/148  
:BLT:SWISS 91->149 YCP1_STRLI 2e-09 45.8 %
:BLT:SWISS 121->322 GLXA_RHIME 2e-11 28.6 %
:PROS 275->317|PS00041|HTH_ARAC_FAMILY_1
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55770.1 GT:GENE BAD55770.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1027203..1028222 GB:FROM 1027203 GB:TO 1028222 GB:DIRECTION + GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD55770.1 LENGTH 339 SQ:AASEQ MTGRTVAMAIAPGALHPWDLYELGVVAAIFGTPQPDLADPWYTLRVCAVAPDQGEQSIGFGAFLRPEHGLAELLAADTVIVPSVAAHCRTGERALPAELLDALVAAHRRGARLVALCDGVFALAAAGILTGRRVTVHWEHAGLLARRHPDLVVDDSVLYLDDGDVLTSAGMTAALDLCLHLVRRDLGATVANRLARRMVIPPHRSGGQAQYVDRAVPADPRDDLGPVLQWAAAHLDQPLTVDLLAARANMSTRTFHRRLQRAGGVTPKQWLLNQRLAYARSLLESTDLTVEAVARMAGLGTATNLRRHFTTALGVTPADYRRTFARREPGTPPRDGAVA GT:EXON 1|1-339:0| BL:SWS:NREP 2 BL:SWS:REP 91->149|YCP1_STRLI|2e-09|45.8|59/141| BL:SWS:REP 121->322|GLXA_RHIME|2e-11|28.6|196/324| PROS 275->317|PS00041|HTH_ARAC_FAMILY_1|PDOC00040| SEG 150->166|dlvvddsvlylddgdvl| BL:PDB:NREP 2 BL:PDB:REP 79->192|3er6D|2e-04|23.0|113/191| BL:PDB:REP 227->323|1d5yA|2e-06|28.9|97/288| RP:PDB:NREP 2 RP:PDB:REP 40->232|3bhnA|1e-20|14.6|178/208| RP:PDB:REP 227->328|1bl0A|7e-21|21.6|102/116| RP:PFM:NREP 2 RP:PFM:REP 77->144|PF01965|3e-04|42.4|66/135|DJ-1_PfpI| RP:PFM:REP 283->321|PF00165|5e-05|41.0|39/40|HTH_AraC| HM:PFM:NREP 3 HM:PFM:REP 234->271|PF00165|7e-09|26.3|38/42|HTH_AraC| HM:PFM:REP 283->322|PF00165|2.5e-08|38.5|39/42|HTH_AraC| HM:PFM:REP 94->183|PF01965|2.1e-15|30.3|89/148|DJ-1_PfpI| GO:PFM:NREP 4 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00165|IPR000005| GO:PFM GO:0005622|"GO:intracellular"|PF00165|IPR000005| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00165|IPR000005| GO:PFM GO:0043565|"GO:sequence-specific DNA binding"|PF00165|IPR000005| RP:SCP:NREP 2 RP:SCP:REP 4->200|1j42A|9e-13|16.8|184/185|c.23.16.2| RP:SCP:REP 175->325|1v4aA1|7e-18|11.3|150/151|a.24.16.4| HM:SCP:REP 2->201|1pe0A_|7.9e-38|33.9|183/187|c.23.16.2|1/1|Class I glutamine amidotransferase-like| HM:SCP:REP 220->271|1d5yA1|1.9e-08|32.7|52/54|a.4.1.8|1/2|Homeodomain-like| HM:SCP:REP 272->323|1d5yA1|6e-09|35.3|51/54|a.4.1.8|2/2|Homeodomain-like| OP:NHOMO 1195 OP:NHOMOORG 285 OP:PATTERN -------------------------------------------------------------------- 1---A--1--1---611----6--17-----163339596-31732------211-----421-4-BEBA-1------------------------1--------A23-7-----------------------------11---2-31-1--------------1-1--1-------------11------------------------1---------1----1-------1---------------------------------------------------------------------------------------------------------------------------11---------------2-36333-----23444---31-3-1111111-114-65336526581-666565ADB66A61-123363122358--------3--12-----------------------------------2--11116FLLJMGA9997FFMPABBA3CKIJ4B63--335-121-3-226316--1113--------2-1-3--2---1--111--1-112--11------24-------------------------------11112-52-21111--1311-2122--1------1-------143-31-22--------2--1----1-2--------4641233-----------------2--1----1-1--------------1----------2635---1-----------11121-1-122177777ACD9BCAD3776-------------11111112-232212-21----------------------------------------------------------------1- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2-----1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 328 STR:RPRED 96.8 SQ:SECSTR ccccEEEEEEcTTcHHHHcHHHHHHHHHHHHccHHHTTcccccEEEEEEEcccEEEcTTcccEEEccEEGGGGGGccEEEEcccccHcTTHHHHHHTcHHHHHccccTTTcEEEEETTHHHHHHHTTTTTTcEEcccGGGHHHHHHTcEccccEccccEEEETTEEEEccGGGHHHHHHHHHHHHccHHHHHHHHTTTccHHHHTTTcHHHHHHHHHHHHHHHHHHHHHHHHTTTTcccccHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHTTcccHHHHHHHHHHHHcccHHHHHTcccccc########### DISOP:02AL 1-2, 321-339| PSIPRED ccccEEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHcccccEEEEEEEEccccEEEEcccEEEEccccHHHcccccEEEEEccccccccccccccHHHHHHHHHHHHcccEEEEEHHHHHHHHccccccccEEEEcHHHHHHHHHHccccEEccccEEEEcccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHcccccccccccccc //