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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55772.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  71/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.1
:206 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   6->120 3e7qB PDBj 3e-09 40.4 %
:RPS:PDB   15->184 2dg7A PDBj 4e-15 21.0 %
:RPS:SCOP  20->81 1z77A1  a.4.1.9 * 3e-15 32.3 %
:HMM:SCOP  7->95 1t33A1 a.4.1.9 * 2.8e-19 38.6 %
:RPS:PFM   23->68 PF00440 * TetR_N 3e-05 43.5 %
:HMM:PFM   23->68 PF00440 * TetR_N 2.9e-19 50.0 46/47  
:BLT:SWISS 10->134 Y2936_MYCBO 4e-14 31.2 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55772.1 GT:GENE BAD55772.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1029572..1030192 GB:FROM 1029572 GB:TO 1030192 GB:DIRECTION + GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD55772.1 LENGTH 206 SQ:AASEQ MTTTGRRPRRTQEQRSTEMRTRLLDATIECLVEYGYAGTTTPRIAERAGVTRGAQVHHFGSKNDLVIAAINHLAQRRVQAVLREMADLAPGADPVASALDFLWELHQDPLFTATVELWVAGRTEPVLAAAMAEVEPFVNGAVLTAVERFVPDEMRRKGARDFVYTAMDTLRGILLAGSGDTDTERAHRRWRRASALLRAAARASDT GT:EXON 1|1-206:0| BL:SWS:NREP 1 BL:SWS:REP 10->134|Y2936_MYCBO|4e-14|31.2|125/195| SEG 185->204|rahrrwrrasallraaaras| BL:PDB:NREP 1 BL:PDB:REP 6->120|3e7qB|3e-09|40.4|109/210| RP:PDB:NREP 1 RP:PDB:REP 15->184|2dg7A|4e-15|21.0|167/185| RP:PFM:NREP 1 RP:PFM:REP 23->68|PF00440|3e-05|43.5|46/47|TetR_N| HM:PFM:NREP 1 HM:PFM:REP 23->68|PF00440|2.9e-19|50.0|46/47|TetR_N| GO:PFM:NREP 2 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00440|IPR001647| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00440|IPR001647| RP:SCP:NREP 1 RP:SCP:REP 20->81|1z77A1|3e-15|32.3|62/75|a.4.1.9| HM:SCP:REP 7->95|1t33A1|2.8e-19|38.6|88/0|a.4.1.9|1/1|Homeodomain-like| OP:NHOMO 98 OP:NHOMOORG 71 OP:PATTERN -------------------------------------------------------------------- ----2-1-111---52211-11--211111121---6332-1------------1-----111-1331111----------------------------------------------------------------------------------------------------------------------------------------------------------------1------------------------------------------------------------------------------------------------------------------------------------------------2111---------1---1-1----------------1--1-----------12---111--2--------1-1-----------1--11-------------------------------11--------11-1----------------1-1----------------1-1--------1------------------------------------------2-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--------1------------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 180 STR:RPRED 87.4 SQ:SECSTR ####ccHHHHHHccccTTHHHHHHHHHHHHHHHccGGGccHHHHHHHTTccHHHHHHHcccTTGGGTTTccccHHHHHHHHHTccTTccHHHHHHHHHHHTTTTTTccTTHHHHHHHHHHHHTcHHHHHHHHHHHHHHHHHHHHHHHHTTccHHHHHHHHHHHHHHHHHHHHHHHHTTTcccHH###################### DISOP:02AL 1-21, 204-206| PSIPRED ccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccc //