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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55774.1
DDBJ      :             putative short chain dehydrogenase
Swiss-Prot:             

Homologs  Archaea  50/68 : Bacteria  872/915 : Eukaryota  193/199 : Viruses  0/175   --->[See Alignment]
c.2.1
:281 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   4->191 1nffA PDBj 3e-30 38.3 %
:RPS:PDB   3->191 1dohB PDBj 2e-39 22.3 %
:RPS:SCOP  8->198 1a27A  c.2.1.2 * 3e-35 29.1 %
:HMM:SCOP  5->218 1zemA1 c.2.1.2 * 8.3e-64 43.0 %
:RPS:PFM   10->171 PF00106 * adh_short 1e-19 42.0 %
:HMM:PFM   10->172 PF00106 * adh_short 2.6e-35 34.6 159/167  
:BLT:SWISS 4->191 HSD_MYCTU 2e-29 38.3 %
:PROS 141->169|PS00061|ADH_SHORT
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55774.1 GT:GENE BAD55774.1 GT:PRODUCT putative short chain dehydrogenase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1031580..1032425 GB:FROM 1031580 GB:TO 1032425 GB:DIRECTION + GB:PRODUCT putative short chain dehydrogenase GB:PROTEIN_ID BAD55774.1 LENGTH 281 SQ:AASEQ MSPAARIAGKVVVITGGARGIGYATARTLRDLGAQVAIGDVDEAKVKESGAELGLDVYGALDVTDPDSFEAFLDQVERTLGPIDVLVNNAGIMPTGHFADEPDRVSRRILDINVYGVVLGSKLATRRMLERGRGHVINIASLAGVVATPGLATYCASKAAVLALTDTLRLEYRDRGIEFSAVTPTFTNTELVAGTAGAKGMRNAEPEEIAAAVAALITTPRRRVAVTKLAGRLANLQYYVPEKVLDFLGDKLGMKEVFLSEVDQQARAAYERRARGEDDES GT:EXON 1|1-281:0| BL:SWS:NREP 1 BL:SWS:REP 4->191|HSD_MYCTU|2e-29|38.3|188/260| PROS 141->169|PS00061|ADH_SHORT|PDOC00060| SEG 204->215|aepeeiaaavaa| SEG 266->275|araayerrar| BL:PDB:NREP 1 BL:PDB:REP 4->191|1nffA|3e-30|38.3|188/244| RP:PDB:NREP 1 RP:PDB:REP 3->191|1dohB|2e-39|22.3|188/271| RP:PFM:NREP 1 RP:PFM:REP 10->171|PF00106|1e-19|42.0|162/169|adh_short| HM:PFM:NREP 1 HM:PFM:REP 10->172|PF00106|2.6e-35|34.6|159/167|adh_short| GO:PFM:NREP 2 GO:PFM GO:0008152|"GO:metabolic process"|PF00106|IPR002198| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00106|IPR002198| RP:SCP:NREP 1 RP:SCP:REP 8->198|1a27A|3e-35|29.1|189/285|c.2.1.2| HM:SCP:REP 5->218|1zemA1|8.3e-64|43.0|214/0|c.2.1.2|1/1|NAD(P)-binding Rossmann-fold domains| OP:NHOMO 16313 OP:NHOMOORG 1115 OP:PATTERN 2211114775756554-71221-1C5584859-1---------21144--622-12--1-43633144 JLa3q41455C886p*sQP-Q*55l*QPQQQf****l***5iF*QEA95FA3SGIB4C11PKR7OLdgdRB1222---2296T11312568717231--A6R4FG*Cf7I1111111111111146549D864A86GHHIH222HBLBHI8787633343664364FKEb7233322233332IC989551G6KEEEEEHFGEEEEGGCKENNELDDFAGENJIB866685Ec6555554455555549888A72B28B26121BF557967659A988767676744445554565555576677787777744433244485358D5554444547755528976321158221A7112225333236433E2FhIIT12212QC*bc68CXNRUMGHJHFGIHJIV-LOMLJiKUdob1*ggTtbo**yurNdHLDQMUNFLOMENAAAAAAAALPRC4BE9111111111112122212211211211119Ko*K8FbUMT*nttywNRRRPhhurWUVVBR*Z*X*sb39MNOLEIJGQOeLrX8I9494AA72222222348LH58R6E51121-433327994C54929C99PY2512232111122141122222413345586ADEFD9IC7777694CB866496A857C1-3445711----CFIL7H9ACC9AAAAAA-C9AAB9AABAC9BA9AA9BOVQIA86B9678999889878789S897876A41799999989999111646444CCBD3JLPJ222727211113573MNMQOBI6CBP6RUMPLNUbRPMVQJQNN5454454444456F76776BA678DGGGJFE77741211134GG98BB--------1-4----1-1-3-1------2-------55431566652F1 11-1RLJ-843-7BHhegZiVfZwnvhHJCHEGLIJGTKPKQQHDDZSVgeu**PbSIJIGKB9G7664844ABB443568CBCCE68-UpIeFeHDAEAA7GKIA-HQC*o*bajPCBJCJaFmZBeCw*d-VWaGJDEaINdUCLFAAT48TJWReijsXFsccQeSfxOZaZ6BA8s8758TMTX*cjRFCSHKID ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 215 STR:RPRED 76.5 SQ:SECSTR ccGGGccTTcEEEETTTTcHHHHHHHHHHHHTTcEEEEEEcccHHHHHHHHHHccEEEEEccTTcHHHHHHHHHHHHHHHccccEEEEcccccccccGGGccHHHHHHHHHHHTHHHHHHHHHHHHHccTTcEEEGEEccGGGTcccccccHHHHHHHHHHHHHHHHHHHHHGGGTcEEEEEEEcccccHHHHHccccTTccTccccE#########EEccccc######################################################### DISOP:02AL 1-3, 272-281| PSIPRED ccccccccccEEEEEccccHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHccEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEccHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccccEEEEEcccccccHHHHHHHHHHHHccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccc //