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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55776.1
DDBJ      :             putative exonuclease
Swiss-Prot:             

Homologs  Archaea  28/68 : Bacteria  758/915 : Eukaryota  98/199 : Viruses  0/175   --->[See Alignment]
d.151.1
:259 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   5->258 2jc5A PDBj 3e-62 48.2 %
:RPS:PDB   5->259 1dewB PDBj 1e-43 34.7 %
:RPS:SCOP  5->256 1bixA  d.151.1.1 * 1e-81 36.3 %
:HMM:SCOP  5->260 1akoA_ d.151.1.1 * 2.2e-68 40.6 %
:HMM:PFM   5->257 PF03372 * Exo_endo_phos 4.5e-37 20.9 249/276  
:BLT:SWISS 9->254 EXOA_BACSU 2e-40 40.1 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55776.1 GT:GENE BAD55776.1 GT:PRODUCT putative exonuclease GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1033633..1034412 GB:FROM 1033633 GB:TO 1034412 GB:DIRECTION + GB:PRODUCT putative exonuclease GB:PROTEIN_ID BAD55776.1 LENGTH 259 SQ:AASEQ MPNIVATINVNGVRAAAGKGMLAWLAATEADIVCLQETRATDEQTAVALAPALADGWQLAHAEPGAKGRAGVGILSRRAPDAVRIGFGSSEFDGSGRYLEADFGEVTVASVYVHSGDAGTPRQDEKYRFMTEFGAYLKARTGDFVVCGDWNIAHTERDLKNWKGNRKSAGFLPEERAWIDELLAAGYVDVVRALHPDVDGPYSWWSYRGRAFDNDSGWRIDYHLARGELAGRAKQAVVERAPSYDQRWSDHAPVTVQYR GT:EXON 1|1-259:0| BL:SWS:NREP 1 BL:SWS:REP 9->254|EXOA_BACSU|2e-40|40.1|237/252| BL:PDB:NREP 1 BL:PDB:REP 5->258|2jc5A|3e-62|48.2|245/259| RP:PDB:NREP 1 RP:PDB:REP 5->259|1dewB|1e-43|34.7|251/279| HM:PFM:NREP 1 HM:PFM:REP 5->257|PF03372|4.5e-37|20.9|249/276|Exo_endo_phos| RP:SCP:NREP 1 RP:SCP:REP 5->256|1bixA|1e-81|36.3|248/275|d.151.1.1| HM:SCP:REP 5->260|1akoA_|2.2e-68|40.6|251/268|d.151.1.1|1/1|DNase I-like| OP:NHOMO 1274 OP:NHOMOORG 884 OP:PATTERN ------1111111111-1-----1--------1-1---111112---1-1111--------111---- -111222222222221111-12--1211111122222243-1112232221222222233111112222121111111111-----1111111111---212112223-2---------------11-111-1-11----------11-1111111111111111111111111111111111221----11-1111111-1-1-111-1----1111---11--11111111--------------------1211111121211221111111111111111111111111111111111111111111111111111111-1111111111111111---11111111--1--1111-1-1----1-11-1-1222432222233332223333322222222222-22222222332123323333333432222222323322222222222222222221121----11341111111111111111112222222222222222222222233222222223322322222223222232322222222222222222222222211111111111111-----1-111111211111111111111111111111--11122111122111111111111111111111111--21112------11111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111222221222111111111111111111111111122333322322333332221111111111111111111111113233333222222211111111111111111111-------------------------------------11 -1--111-11-1-1---------------------------------------------------------------------------112-111-----1--1--11-2141111121111114121453-11111111113211-1-1--11-1121121111121112112212-F332113221-11112121- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 255 STR:RPRED 98.5 SQ:SECSTR ####EEEEEcccHHHHHHTTHHHHHHHHcccEEEEEccccccTTccGGGGccTTccEEEEEcccccTTcccEEEEEcccccEEEEccccTTTcccccEEEEEccccEEEEEEcccccGGGTTHHHHHHHHHHHHHHHHHHHHHEEEEEEccccccGGGcccccTTTTcTTccHHHHHHHHHHHHTTcEEHHHHHcTTcccccccccccTTHHHHTcccccEEEEEcGGGGGGEEEEEEcTTcHTTccccccccEEEEEc DISOP:02AL 259-260| PSIPRED ccEEEEEEEccccccccHHHHHHHHHHccccEEEEEEEEccHHHccHHHHHHcccccEEEEcccccccccEEEEEEccccHHEEccccccccccccEEEEEEEccEEEEEEEccccccccccHHHHHHHHHHHHHHHHHccccEEEEEEccccccHHHcccHHHHcccccccHHHHHHHHHHHHcccEEEHHHHcccccccEEEEcccccccccccccEEEEEEEcHHHHHHHHccEEEccccccccccccccEEEEEc //