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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55777.1
DDBJ      :             putative guanyl-specific ribonuclease
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  2/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
d.1.1
:152 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   66->152 1brkC PDBj 2e-09 45.7 %
:RPS:PDB   49->152 3d5gB PDBj 2e-23 29.8 %
:RPS:SCOP  65->152 1a2pA  d.1.1.2 * 4e-20 37.8 %
:HMM:SCOP  44->152 1a2pA_ d.1.1.2 * 5.2e-28 39.2 %
:RPS:PFM   79->150 PF00545 * Ribonuclease 8e-04 40.6 %
:HMM:PFM   62->151 PF00545 * Ribonuclease 1.5e-21 44.9 78/83  
:HMM:PFM   40->77 PF03057 * DUF236 0.00077 27.0 37/141  
:BLT:SWISS 66->152 RN_BACPU 2e-08 45.7 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55777.1 GT:GENE BAD55777.1 GT:PRODUCT putative guanyl-specific ribonuclease GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1035387..1035845 GB:FROM 1035387 GB:TO 1035845 GB:DIRECTION + GB:PRODUCT putative guanyl-specific ribonuclease GB:PROTEIN_ID BAD55777.1 LENGTH 152 SQ:AASEQ MLRLVGALGALAVVVLISVLTTRGSDTAPSAISATATPAAGASSTGKPAAPVTSPTRVAGVPERAYTTLAEIDAGRWPDSANAPGTKGGERWMNRDGDLPRADAAGRPITYQEWDVNPKQRNRTRDAERIVTGSDGSAWYTGDHYQTFTRMR GT:EXON 1|1-152:0| BL:SWS:NREP 1 BL:SWS:REP 66->152|RN_BACPU|2e-08|45.7|81/162| TM:NTM 1 TM:REGION 5->27| SEG 4->16|lvgalgalavvvl| SEG 27->46|tapsaisatatpaagasstg| BL:PDB:NREP 1 BL:PDB:REP 66->152|1brkC|2e-09|45.7|81/107| RP:PDB:NREP 1 RP:PDB:REP 49->152|3d5gB|2e-23|29.8|94/97| RP:PFM:NREP 1 RP:PFM:REP 79->150|PF00545|8e-04|40.6|69/93|Ribonuclease| HM:PFM:NREP 2 HM:PFM:REP 62->151|PF00545|1.5e-21|44.9|78/83|Ribonuclease| HM:PFM:REP 40->77|PF03057|0.00077|27.0|37/141|DUF236| GO:PFM:NREP 2 GO:PFM GO:0003723|"GO:RNA binding"|PF00545|IPR000026| GO:PFM GO:0004521|"GO:endoribonuclease activity"|PF00545|IPR000026| RP:SCP:NREP 1 RP:SCP:REP 65->152|1a2pA|4e-20|37.8|82/108|d.1.1.2| HM:SCP:REP 44->152|1a2pA_|5.2e-28|39.2|102/108|d.1.1.2|1/1|Microbial ribonucleases| OP:NHOMO 2 OP:NHOMOORG 2 OP:PATTERN -------------------------------------------------------------------- ------------------------------------11------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 104 STR:RPRED 68.4 SQ:SECSTR ##############################################HHcccccEEEEGGGccHHHHHHHHHHHTTTccGGcccccTTTTcccccTTcccccccTTTc##ccEEEEcccccccccccccEEEEcTTccEEEETTTTcccEEEE DISOP:02AL 27-50| PSIPRED cHHHHHHHHHHHHHHHHHHHHHcccccccHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccEEEcccccccccccccccccEEEEEcccccccccccccEEEEcccccEEEEHHHHHHHHccc //