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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55779.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  38/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.1
:213 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   14->72 2fd5A PDBj 3e-04 27.1 %
:RPS:PDB   18->211 3b6cA PDBj 2e-10 12.8 %
:RPS:SCOP  14->72 2fd5A1  a.4.1.9 * 1e-09 27.1 %
:HMM:SCOP  15->93 2fbqA1 a.4.1.9 * 2.5e-12 30.4 %
:RPS:PFM   23->69 PF00440 * TetR_N 4e-04 36.2 %
:HMM:PFM   23->69 PF00440 * TetR_N 1.8e-07 38.3 47/47  
:BLT:SWISS 19->68 BETI_RHIME 2e-05 38.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55779.1 GT:GENE BAD55779.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1036339..1036980) GB:FROM 1036339 GB:TO 1036980 GB:DIRECTION - GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD55779.1 LENGTH 213 SQ:AASEQ MTAQRTYGGVSAEERRAQRRTALLNAALEIVGTEGTAKLTVSGLCARAGLNERYYYENFDSREAVLAALFDQIAEELALAILAALREAPDETRAKAHAAIAAGIHLLTDDPRKARAALIAGMSTPELRARGNQTVRAFARMVAAQGVGFYGRSEPVSDAVIDFRATYLVGGLVHTLTSWLQGEIALDRDELVEHTTDVFVLLGEDLAGRLPKP GT:EXON 1|1-213:0| BL:SWS:NREP 1 BL:SWS:REP 19->68|BETI_RHIME|2e-05|38.0|50/203| SEG 73->88|iaeelalailaalrea| SEG 94->105|akahaaiaagih| BL:PDB:NREP 1 BL:PDB:REP 14->72|2fd5A|3e-04|27.1|59/180| RP:PDB:NREP 1 RP:PDB:REP 18->211|3b6cA|2e-10|12.8|180/202| RP:PFM:NREP 1 RP:PFM:REP 23->69|PF00440|4e-04|36.2|47/47|TetR_N| HM:PFM:NREP 1 HM:PFM:REP 23->69|PF00440|1.8e-07|38.3|47/47|TetR_N| GO:PFM:NREP 2 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00440|IPR001647| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00440|IPR001647| RP:SCP:NREP 1 RP:SCP:REP 14->72|2fd5A1|1e-09|27.1|59/76|a.4.1.9| HM:SCP:REP 15->93|2fbqA1|2.5e-12|30.4|79/0|a.4.1.9|1/1|Homeodomain-like| OP:NHOMO 74 OP:NHOMOORG 38 OP:PATTERN -------------------------------------------------------------------- --------------412----3--31-----234544455----------------------1--1-2-1---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------111111-----11--------1---1-----------------------------------------1-1----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1111111----------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 209 STR:RPRED 98.1 SQ:SECSTR ccTcccc####cccccTccHHHHHHHHHHHHHHHcGGGccHHHHHHHHTccHHHHHHHHccHHHHHHHHHHHHHccHHGGGcccccccTTcHHHHHHHHHHHHHHHHHHcTTHHHHHTTcccccHHHHHHHHHHHHHHHTTTccHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHTccTTTcHHHHHTHHHHHcccHcH DISOP:02AL 1-20, 208-213| PSIPRED cccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccc //