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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55785.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  15/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.1
:203 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   37->160 2of7A PDBj 9e-15 38.3 %
:RPS:PDB   37->193 3bqzA PDBj 1e-10 16.3 %
:RPS:SCOP  37->68 1jt0A1  a.4.1.9 * 2e-09 34.4 %
:HMM:SCOP  10->71 1t33A1 a.4.1.9 * 7e-16 45.9 %
:RPS:PFM   37->71 PF00440 * TetR_N 5e-06 57.1 %
:HMM:PFM   28->71 PF00440 * TetR_N 1.4e-20 52.3 44/47  
:BLT:SWISS 37->155 TCMR_STRGA 5e-14 41.5 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55785.1 GT:GENE BAD55785.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1043280..1043891 GB:FROM 1043280 GB:TO 1043891 GB:DIRECTION + GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD55785.1 LENGTH 203 SQ:AASEQ MSVEPSDAAPAPGLRERKKERTRRALRTAAFRLFREQGYSETTVEQIAAAAEVSPSTFFRYFPSKEHLVVADDLDPVMIAEIRAQPRGLSPFLAFRNAMSAAFATLTPEELAFEQERQALLYHVPELRAAIGRELERGIEMIAGLLAEYLERSPDDFDVRAAAGAIAGAGIAVSLRSPVNAENLGRVMEFLDAGMPLGSGRPG GT:EXON 1|1-203:0| BL:SWS:NREP 1 BL:SWS:REP 37->155|TCMR_STRGA|5e-14|41.5|106/226| SEG 14->36|lrerkkertrralrtaafrlfre| SEG 161->172|aaagaiagagia| BL:PDB:NREP 1 BL:PDB:REP 37->160|2of7A|9e-15|38.3|120/185| RP:PDB:NREP 1 RP:PDB:REP 37->193|3bqzA|1e-10|16.3|153/186| RP:PFM:NREP 1 RP:PFM:REP 37->71|PF00440|5e-06|57.1|35/47|TetR_N| HM:PFM:NREP 1 HM:PFM:REP 28->71|PF00440|1.4e-20|52.3|44/47|TetR_N| GO:PFM:NREP 2 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00440|IPR001647| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00440|IPR001647| RP:SCP:NREP 1 RP:SCP:REP 37->68|1jt0A1|2e-09|34.4|32/71|a.4.1.9| HM:SCP:REP 10->71|1t33A1|7e-16|45.9|61/0|a.4.1.9|1/1|Homeodomain-like| OP:NHOMO 25 OP:NHOMOORG 15 OP:PATTERN -------------------------------------------------------------------- ----2----------21----3----------312111---3-2-1---------------------11------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 167 STR:RPRED 82.3 SQ:SECSTR ####################################HHHHHccHHHHHHHHTccHHHHHHHHccHHHHHTcccHHHHHHHHHHHGGGcccHHHHHHHHHHHHHHHHHcTTHHHHHHHHHHHTTcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHTHHHHH DISOP:02AL 1-25, 199-203| PSIPRED cccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccc //