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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55790.1
DDBJ      :             hypothetical protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  3/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.35.1
:394 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   32->67 1sq8A PDBj 2e-04 41.7 %
:RPS:PDB   31->130 2aw6A PDBj 5e-12 13.1 %
:RPS:PDB   209->370 3dteA PDBj 3e-08 17.7 %
:RPS:SCOP  32->72 1d1lA  a.35.1.2 * 1e-08 22.0 %
:HMM:SCOP  24->96 1y9qA1 a.35.1.8 * 2.9e-13 32.9 %
:RPS:PFM   36->72 PF01381 * HTH_3 5e-04 40.5 %
:RPS:PFM   207->305 PF06114 * DUF955 1e-05 36.3 %
:HMM:PFM   36->90 PF01381 * HTH_3 6.7e-13 32.7 55/55  
:HMM:PFM   180->304 PF06114 * DUF955 5.9e-11 27.7 119/122  
:BLT:SWISS 31->67 RPC1_BPD3 1e-04 48.6 %
:PROS 222->231|PS00142|ZINC_PROTEASE
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55790.1 GT:GENE BAD55790.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1046820..1048004) GB:FROM 1046820 GB:TO 1048004 GB:DIRECTION - GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAD55790.1 LENGTH 394 SQ:AASEQ MPRAPGPRRFSAAPARECSRIAHMTELPAGELGDRIAQARSRHGLTQAQLAAAIGIDRSALAKIEGGTRRVSALELAGIAEELGERIEWFVLPSPPAIVSHRNLQEPGTPSPEIDKLLERLAWNVEFMTEHDRALGLDGPVQMAKPGSIAEAEEAARSARERLGLDDAEPARDIGRKMGELGLLVFSFELGADAADAASLLLRAGGIALINGSLQVGRRRLALAHEFGHYLFADEYTVDWRLGAAADTGAWETRLDRFARAVLLPVRSLPARWREYAATEGVRTAAVRLASDYQVDMTTLAQRLLELEVIEAKQAGFIRTVRTTAADIVEFDLVPRHELEPPYLSHRYQKSVLRLLRAGVVSTARAADLLFDTIEEGELPGPDQLAENAIWDFV GT:EXON 1|1-394:0| BL:SWS:NREP 1 BL:SWS:REP 31->67|RPC1_BPD3|1e-04|48.6|37/223| PROS 222->231|PS00142|ZINC_PROTEASE|PDOC00129| SEG 73->85|alelagiaeelge| SEG 150->162|aeaeeaarsarer| SEG 190->206|lgadaadaaslllragg| BL:PDB:NREP 1 BL:PDB:REP 32->67|1sq8A|2e-04|41.7|36/64| RP:PDB:NREP 2 RP:PDB:REP 31->130|2aw6A|5e-12|13.1|99/287| RP:PDB:REP 209->370|3dteA|3e-08|17.7|158/241| RP:PFM:NREP 2 RP:PFM:REP 36->72|PF01381|5e-04|40.5|37/55|HTH_3| RP:PFM:REP 207->305|PF06114|1e-05|36.3|91/120|DUF955| HM:PFM:NREP 2 HM:PFM:REP 36->90|PF01381|6.7e-13|32.7|55/55|HTH_3| HM:PFM:REP 180->304|PF06114|5.9e-11|27.7|119/122|DUF955| GO:PFM:NREP 1 GO:PFM GO:0043565|"GO:sequence-specific DNA binding"|PF01381|IPR001387| RP:SCP:NREP 1 RP:SCP:REP 32->72|1d1lA|1e-08|22.0|41/61|a.35.1.2| HM:SCP:REP 24->96|1y9qA1|2.9e-13|32.9|73/0|a.35.1.8|1/1|lambda repressor-like DNA-binding domains| OP:NHOMO 3 OP:NHOMOORG 3 OP:PATTERN -------------------------------------------------------------------- ------------------------------------1-------------------1---------------------------------------------------------------------------------------------------------------1-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 272 STR:RPRED 69.0 SQ:SECSTR ##################ccccTcccHccccHHHHHHHHHHHTTccHHHHHTTHTccHHHHHHHHTTcccccHHHHHHHHHHHTccHHHHHHHHTTcccTTcHHHHHHHHHHHHHHcGGGHHHHHHHHGGcc############################################################################EEETTccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHccHHHHHHHHHHHHHHHHcHHHHHHHHHHHcccHHHHH####HHHHHHTccHHHHHHHHHHTccccEEEEEEEEcccccEEEEEEEccccccccTTcEEcTHHHHHHTccEEEEEEEEcTTccEE######################## DISOP:02AL 1-12, 323-337| PSIPRED cccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHcccccccHHHHHHHHHHHcccHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHcccEEEEEEccccEEEEEEEEccccEEEEEEccccHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHcccccccHHHHHHHHHHHcccHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHcccccccccccHHHHHHHHHHccc //