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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55795.1
DDBJ      :             putative cytidine deaminase
Swiss-Prot:             

Homologs  Archaea  21/68 : Bacteria  367/915 : Eukaryota  140/199 : Viruses  0/175   --->[See Alignment]
c.97.1
:133 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   19->128 1zabC PDBj 4e-22 46.4 %
:RPS:PDB   7->123 3dmoB PDBj 2e-18 40.2 %
:RPS:SCOP  19->123 1wn5A1  c.97.1.1 * 1e-25 37.9 %
:HMM:SCOP  1->129 1r5tA_ c.97.1.1 * 1.7e-36 52.7 %
:RPS:PFM   7->55 PF08211 * dCMP_cyt_deam_2 8e-04 32.7 %
:HMM:PFM   8->100 PF00383 * dCMP_cyt_deam_1 1.9e-14 31.3 83/102  
:BLT:SWISS 19->128 CDD_MOUSE 1e-21 46.4 %
:PROS 56->96|PS00903|CYT_DCMP_DEAMINASES

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55795.1 GT:GENE BAD55795.1 GT:PRODUCT putative cytidine deaminase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1051749..1052150 GB:FROM 1051749 GB:TO 1052150 GB:DIRECTION + GB:PRODUCT putative cytidine deaminase GB:PROTEIN_ID BAD55795.1 LENGTH 133 SQ:AASEQ MPEIDWNSLRDNAFRVMHNAYAPYSRFPVGAAALRADGGIVSGCNVENVSYGLGLCAETVLVGNFIAGGGGRLLAVSVTDSRGEILLPCGRCRQVLYEHGGAGLLVDHRAGPVPLARLLPDAFGPDDLAAGQR GT:EXON 1|1-133:0| BL:SWS:NREP 1 BL:SWS:REP 19->128|CDD_MOUSE|1e-21|46.4|110/146| PROS 56->96|PS00903|CYT_DCMP_DEAMINASES|PDOC00702| BL:PDB:NREP 1 BL:PDB:REP 19->128|1zabC|4e-22|46.4|110/136| RP:PDB:NREP 1 RP:PDB:REP 7->123|3dmoB|2e-18|40.2|117/127| RP:PFM:NREP 1 RP:PFM:REP 7->55|PF08211|8e-04|32.7|49/124|dCMP_cyt_deam_2| HM:PFM:NREP 1 HM:PFM:REP 8->100|PF00383|1.9e-14|31.3|83/102|dCMP_cyt_deam_1| GO:PFM:NREP 2 GO:PFM GO:0004126|"GO:cytidine deaminase activity"|PF08211|IPR013171| GO:PFM GO:0008270|"GO:zinc ion binding"|PF08211|IPR013171| RP:SCP:NREP 1 RP:SCP:REP 19->123|1wn5A1|1e-25|37.9|103/125|c.97.1.1| HM:SCP:REP 1->129|1r5tA_|1.7e-36|52.7|129/141|c.97.1.1|1/1|Cytidine deaminase-like| OP:NHOMO 579 OP:NHOMOORG 528 OP:PATTERN 111-111----------111111-11111111----------------1------------------- 1-1-11------1-11111-31111111111111111111-11111111111111111--1111111111--------1---1-------11-111----111111----------------------------1-11111---1---1---1----1-1----2------------------1111111-111222222221222222111111222111-11211111111111111111111111111-11-11111--------11---11111111111111111221112111211111111111111111111111111121111111111111111111121111111111111111111111-11-1111-------1-------------------------1--11111--111111111111-1-1-1111111111---------11---1-------------------------------11111------1111-11-11--1-1111-11-1---------------------------1--------------1-----1---------1-----1-----11-------------------------------11--1-1-1---------------------------------------------------------------------------------------------1------------------------------1111---11--------------------------------------------111111111------------------------------------------1-1111-1------1-----------1--11111111111111-1- ----11--1--111-11---11111--1111-1-111111-111-111-111111111-1111-11111111-11111111-11--11-122111211-1--1111-1-1113332-1-1-11111111121-111-11-1111--111111-11111-22114121311222111----1-1--21--1--------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 125 STR:RPRED 94.0 SQ:SECSTR ###ccHHHHHHHHHHHHTTcccTTTccccEEEEEETTccEEEEEccccccGGGcccHHHHHHHHHHHTTccTTcEEEEEEEccccccccHHHHHHHHHHHcTTcEETccEEEEEHHHHcTTccccccc##### DISOP:02AL 1-2, 126-133| PSIPRED cccccHHHHHHHHHHHHHHcccccccccEEEEEEEccccEEEEEEEEccccccHHHHHHHHHHHHHHccccEEEEEEEEccccccccccHHHHHHHHHHccccEEEcccccEEEHHHHccccccHHHcccccc //