Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55802.1
DDBJ : putative hydrolase
Swiss-Prot:
Homologs Archaea 0/68 : Bacteria 262/915 : Eukaryota 0/199 : Viruses 1/175 --->[See Alignment]
d.3.1
:374 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB 281->348 2k1gA PDBj 3e-07 42.6 %
:RPS:SCOP 276->371 2evrA2 d.3.1.16 * 1e-19 25.3 %
:HMM:SCOP 250->372 2evrA2 d.3.1.16 * 4.9e-32 40.2 %
:RPS:PFM 276->359 PF00877 * NLPC_P60 3e-14 53.0 %
:HMM:PFM 274->366 PF00877 * NLPC_P60 6.7e-21 42.4 92/105
:HMM:PFM 32->98 PF06013 * WXG100 2.5e-08 23.9 67/86
:BLT:SWISS 276->350 YDDH_BACSU 9e-16 44.0 %
:SEG
SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55802.1
GT:GENE BAD55802.1
GT:PRODUCT putative hydrolase
GT:DATABASE GIB00210CH01
GT:ORG nfar0
GB:ACCESSION GIB00210CH01
GB:LOCATION complement(1057286..1058410)
GB:FROM 1057286
GB:TO 1058410
GB:DIRECTION -
GB:PRODUCT putative hydrolase
GB:PROTEIN_ID BAD55802.1
LENGTH 374
SQ:AASEQ MIDINVLVKPLLDLLSSFGSGVLPSGGPSDALVSASTALEQLHQQGRASINQMNSAWDGVAADAATAKALRVQTSAATISDRGTEMATVVNQAAAQVETGQKDLNGIVQSFVNTATALGPTLATPQGLTVLVGSAIEHLNQGLAVVGRVRSELDTQTAAITQLTPPPSTPPVASLPGALAGGASSGLQGLMGMVSQAGSLATTMASTPLKQVSKAANTGTTPSSAAPSGQNPNSSTSTTATTDGVKITLPDGSVVEAPNEKAATAVQAAIGAVGTPYVWGGNDPGSGIDCSGLTKYAYGEAGVELPRLAQEQHIGHPQVSPGDLMPGDLAVWDGHVAMVIGNGQLVEAGDPVSISSIRTENMGMEFYGFYRPTA
GT:EXON 1|1-374:0|
BL:SWS:NREP 1
BL:SWS:REP 276->350|YDDH_BACSU|9e-16|44.0|75/329|
SEG 56->69|awdgvaadaataka|
SEG 114->125|tatalgptlatp|
SEG 163->192|ltpppstppvaslpgalaggassglqglmg|
SEG 234->242|sststtatt|
SEG 262->275|aatavqaaigavgt|
BL:PDB:NREP 1
BL:PDB:REP 281->348|2k1gA|3e-07|42.6|68/129|
RP:PFM:NREP 1
RP:PFM:REP 276->359|PF00877|3e-14|53.0|83/100|NLPC_P60|
HM:PFM:NREP 2
HM:PFM:REP 274->366|PF00877|6.7e-21|42.4|92/105|NLPC_P60|
HM:PFM:REP 32->98|PF06013|2.5e-08|23.9|67/86|WXG100|
RP:SCP:NREP 1
RP:SCP:REP 276->371|2evrA2|1e-19|25.3|95/148|d.3.1.16|
HM:SCP:REP 250->372|2evrA2|4.9e-32|40.2|122/0|d.3.1.16|1/1|Cysteine proteinases|
OP:NHOMO 496
OP:NHOMOORG 263
OP:PATTERN -------------------------------------------------------------------- ---1723333342322211-192243222224478944254129322-411113-11-11222135288951---111--21------------------------------------------------------11111---21-------------------------------------111-----3---1-11--1--1--111-11121---1111--2112111--1----------1-------3-11221-1-1--222221--111111------------111-11-1--------1-----11---2-1----5533345641511711111--2122--6--331-1---11-------------1--------------------------------1--------------------------1--1111------------------------------------------------------11111222222211111111111111221--11----1--122-21-1---------11111111----1----------------112111111------11-------------------------22---------------------------------------------------11--------1---1---111-1-----1--------------------------11-------------------------------1--1--------------------------1-----2211-22221222------------------------------------------------------------------------------------1------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- --------------1----------------------------------------------------------------------------------------------------------------------------------------------------------------
STR:NPRED 72
STR:RPRED 19.3
SQ:SECSTR ####################################################################################################################################################################################################################################################################################ccTTccccTTcccHHHHHHHHHHHTcccccccHHHHGGGcEEEcGGGccTTEEEEEEEEEEEEEETTEEEEE##########################
DISOP:02AL 151-183, 214-261|
PSIPRED cccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccHHHHHccHHHHHHccccccccccHHHHHHHHHcccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccccHHHccccccccccccccccccccEEcccccccccccHHHHHHHHHHHHHccccEEEccccccccccHHHHHHHHHHHccccccccHHHHHHccccccHHHcccccEEEEccEEEEEEcccEEEEccccEEEEEccccHHHcccEEEEcccc
//
[GTOP]
