[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55810.1
DDBJ      :             putative hydrolase
Swiss-Prot:             

Homologs  Archaea  28/68 : Bacteria  550/915 : Eukaryota  55/199 : Viruses  0/175   --->[See Alignment]
c.56.5
:267 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   3->262 1ysjA PDBj 2e-23 36.1 %
:RPS:PDB   2->266 2c6gA PDBj 4e-30 9.6 %
:RPS:SCOP  2->202 1r3nA1  c.56.5.4 * 5e-18 8.7 %
:HMM:SCOP  1->264 2q43A1 c.56.5.4 * 5.7e-26 36.1 %
:RPS:PFM   8->262 PF01546 * Peptidase_M20 7e-10 29.0 %
:HMM:PFM   3->262 PF01546 * Peptidase_M20 2.4e-17 31.1 122/171  
:BLT:SWISS 5->260 CAAL4_RHOSR 3e-84 56.2 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55810.1 GT:GENE BAD55810.1 GT:PRODUCT putative hydrolase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1064583..1065386 GB:FROM 1064583 GB:TO 1065386 GB:DIRECTION + GB:PRODUCT putative hydrolase GB:PROTEIN_ID BAD55810.1 LENGTH 267 SQ:AASEQ MPELPVGVRLIFQPAEEVMPGGALDMVAAGALDGIERIFAVHCDPRLEVGRVGMRVGAITSAADTVELVLDSPGGHTSRPHLTSDLVYAIGTVITGLPGLLSRRIDPRTSTVMVWGAVSAGKAPNAIPQTGMLTGTVRTGDHATWSLLEPMVHEIVDGLLAPTGVRYQLNYRRGVPPVVNDEHSARQFEDAIRALGPDALSDTPQSGGGEDFSWYLEEVPGAMARLGVWSGHGEQLDLHQPTFDIDERALAVGVRVFTNLVLQQRPR GT:EXON 1|1-267:0| BL:SWS:NREP 1 BL:SWS:REP 5->260|CAAL4_RHOSR|3e-84|56.2|256/793| BL:PDB:NREP 1 BL:PDB:REP 3->262|1ysjA|2e-23|36.1|230/351| RP:PDB:NREP 1 RP:PDB:REP 2->266|2c6gA|4e-30|9.6|260/679| RP:PFM:NREP 1 RP:PFM:REP 8->262|PF01546|7e-10|29.0|241/308|Peptidase_M20| HM:PFM:NREP 1 HM:PFM:REP 3->262|PF01546|2.4e-17|31.1|122/171|Peptidase_M20| GO:PFM:NREP 2 GO:PFM GO:0008152|"GO:metabolic process"|PF01546|IPR002933| GO:PFM GO:0016787|"GO:hydrolase activity"|PF01546|IPR002933| RP:SCP:NREP 1 RP:SCP:REP 2->202|1r3nA1|5e-18|8.7|183/322|c.56.5.4| HM:SCP:REP 1->264|2q43A1|5.7e-26|36.1|147/0|c.56.5.4|1/1|Zn-dependent exopeptidases| OP:NHOMO 1360 OP:NHOMOORG 633 OP:PATTERN ------1-1111112---------111-1111------------1-----111-11211111-1---- -2-1322411231322111-32--1211111122221333-211112221--532322--112-32212111111211--121--1----------1--1---1131221---------------1111111111111111---112232222112311111122223222111111111111212--11-2243444455545555554233455563455623444442846444344444444445445431-12211-2-331122-11121223111----22211111111111-------------211322111215123232222232418222121-11311----11-----5-111111315-11221-------4552113223111111--11-4-2322222334--8665334347333111-2431111256--------4---1-13------------------------------12321555348775783222155432222-18546775-134121422725144121----2----------1121--1-1-12--1111-1-1-1---111--1211-----22222------------111-----1-121121-1111122111-1-21--3---------------42-12-111-111---1----11---11------256532--1----------------2--1----1----------------111111-------11---1--------1--33323---1---2212-212-1222-111111--11-11---2-----1-1--2211211111-------3111111--------3----------------------------111--11----- ------1-751--1--11122212222------1--1111111---21-111-1--------------------------------------1---------------1-------------------------------------------------------------------221E11122378B1731111114 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 266 STR:RPRED 99.6 SQ:SECSTR TccccEEEEEEEEccGGGTcHHHHHHHHHcHHHHHHHEEEEEEcccccccccEEccEEEEEEcGGGHHHHHHHHHccccccTTcTTccHHHHHHHHccccccccccccccccccccTTHHHHHTTcccEEEEEEEccccTTTTcTTccHHHHHHHTcTTcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHTTcHHHHHHHTcccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHTccTTccTTcT# PSIPRED cccccccEEEEEEcccccccccHHHHHHccccccccEEEEEEccccccccEEEEEcccEEEEEEEEEEEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEEccccccccccEEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHccEEEEEEEcccccccccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHccccEEEEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHccc //