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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55815.1
DDBJ      :             putative aminotransferase
Swiss-Prot:             

Homologs  Archaea  64/68 : Bacteria  733/915 : Eukaryota  181/199 : Viruses  0/175   --->[See Alignment]
c.67.1
:393 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   15->388 1wstA PDBj 1e-66 39.2 %
:RPS:PDB   6->389 2egyB PDBj 5e-47 37.1 %
:RPS:SCOP  1->389 1vp4A  c.67.1.1 * 5e-48 30.9 %
:HMM:SCOP  6->390 1x0mA1 c.67.1.1 * 2.8e-96 36.3 %
:RPS:PFM   60->375 PF00155 * Aminotran_1_2 4e-30 37.1 %
:HMM:PFM   45->375 PF00155 * Aminotran_1_2 1.6e-35 25.1 319/363  
:BLT:SWISS 15->386 Y104_SULSO 4e-56 35.3 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55815.1 GT:GENE BAD55815.1 GT:PRODUCT putative aminotransferase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1070170..1071351 GB:FROM 1070170 GB:TO 1071351 GB:DIRECTION + GB:PRODUCT putative aminotransferase GB:PROTEIN_ID BAD55815.1 LENGTH 393 SQ:AASEQ MSSTLPPLAGKLGGLTSSAIRDLLKLTAHADIVSLAGGLPDAELMPRERIAAAADAALRGPGCLQYTESPGWGPLREVLAARESARLGRTVPVAEVFVTHGSQQALSLLAEVLLDPGALVVVEDPAYVGALQVFRAAGARIVAVPLDAEGMRVDVLRELLGRGERPAVVHTVSNFHNPGGVTMSPARRRELAELAQTHGFWVIEDDPYGELWFDRPAPAPVASHAPNVIRLSSASKIIAPTLRVGWMVAPDPVCRAVELLKQGADLCGSALTQQIAAELLADTTWLTGHVDRVRAVYGARATALVHAVRETFGERIVCTDAAGGMFVWADFTDGTDTGQMLPRALEAGVAYVPGQAFAVSEGYRGSLRMCFTTSEAPVLGDAVQRLAKAHAAG GT:EXON 1|1-393:0| BL:SWS:NREP 1 BL:SWS:REP 15->386|Y104_SULSO|4e-56|35.3|371/401| SEG 51->57|aaaadaa| BL:PDB:NREP 1 BL:PDB:REP 15->388|1wstA|1e-66|39.2|372/403| RP:PDB:NREP 1 RP:PDB:REP 6->389|2egyB|5e-47|37.1|375/394| RP:PFM:NREP 1 RP:PFM:REP 60->375|PF00155|4e-30|37.1|307/341|Aminotran_1_2| HM:PFM:NREP 1 HM:PFM:REP 45->375|PF00155|1.6e-35|25.1|319/363|Aminotran_1_2| GO:PFM:NREP 3 GO:PFM GO:0009058|"GO:biosynthetic process"|PF00155|IPR004839| GO:PFM GO:0016769|"GO:transferase activity, transferring nitrogenous groups"|PF00155|IPR004839| GO:PFM GO:0030170|"GO:pyridoxal phosphate binding"|PF00155|IPR004839| RP:SCP:NREP 1 RP:SCP:REP 1->389|1vp4A|5e-48|30.9|388/420|c.67.1.1| HM:SCP:REP 6->390|1x0mA1|2.8e-96|36.3|383/0|c.67.1.1|1/1|PLP-dependent transferases| OP:NHOMO 4327 OP:NHOMOORG 978 OP:PATTERN 332132443444444346232222422334431-111-111116535542444-43443442223-11 4483F322333-3-74222-24--2B21222244446798373476443442677435113553858B9C3355556523-3333222--1--2--1----5-22B1612---------------3423222522354455112664334333342221111-13223352-2---112---144623112438BBCBCEBD9DCCDEC49987ACED675B344433433MB111-1-1111111113---4514322361116666111323832122222112133222221321221111111111111321434222315456888787846325552333734-1252215516422-3333232224126555-----22BA8444543434444444434C-56A58B7A7G4-B77899889D9B93141447534656D6666666677723569--------1---------------------24815FEC9DOOPLMQHEEECQQSTGGGG8DOHLFEIG-1ABB69766LBA6DA592143474---1-1---1354-5411567287987-433--1332344378-421111111111121111111-2113--423-3131112-5333--12123-1123-5---3231------67C61A73443333323-4333423323434223225BBBA82215466656555555564C-141112--733343144444---------211122868--1------------776764512142CADBGICCADEEC67781-111111-3211411111456546753433444-11111312222--------------------------------------2221133333151 ----224--1--2231232745345543322224313333333111422434955342311142234223324343313223333322-45222415244212433-3736141422112-12162-41593-211121111211-11-111-21432444523411121E1152223-U-3125722D6231462223 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 393 STR:RPRED 100.0 SQ:SECSTR cccccHHcccGGGGGccccTTTHHHHccccccEEcccccccGGGccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHTccGcccccTGGEEEEccHHHHHHHHHHHHccTTcEEEEEEcccHHHHHHHHTTccEEEEEEEETTEEcHHHHHHHHHHcccccEEEEcccccTTTcccccHHHHHHHHHHHHTTTccEEEEcTTTTccccccccccHHHHHHTEEEEEEcTTTTccTTccEEEEccHHHHHHHHHHHHHHHccccHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHccTTcEEcccccccEEEEEccTTccHHHHHHHHHHTTEEcEEcGGGcTTcccTTEEEEEcccccHHHHHHHHHHHHHHcccT DISOP:02AL 1-6, 8-11| PSIPRED ccccccHHHHHHccccccHHHHHHHHHHccccEEccccccccccccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHcccccccccEEEEccHHHHHHHHHHHHcccccEEEEEcccHHHHHHHHHHHccEEEEEEcccccccHHHHHHHHHHccccEEEEEEccccccccccccHHHHHHHHHHHHHcccEEEEEccccccccccccccccccccccEEEEEcHHHHHHHHHcEEEEEccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEcccccEEEEEEccccccHHHHHHHHHHcccEEEEccccccccccccEEEEEEccccHHHHHHHHHHHHHHHccc //