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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55818.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  4/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.1
:197 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   2->53 3g7rB PDBj 4e-05 42.3 %
:RPS:PDB   12->186 2dtzB PDBj 3e-08 7.4 %
:RPS:SCOP  12->55 1jt0A1  a.4.1.9 * 5e-10 18.2 %
:HMM:SCOP  1->84 1t33A1 a.4.1.9 * 1e-12 27.7 %
:HMM:PFM   17->55 PF00440 * TetR_N 1.9e-10 30.8 39/47  
:HMM:PFM   159->182 PF03765 * CRAL_TRIO_N 0.00073 47.8 23/55  
:BLT:SWISS 10->53 TTGW_PSEPU 9e-05 36.4 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55818.1 GT:GENE BAD55818.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1075333..1075926) GB:FROM 1075333 GB:TO 1075926 GB:DIRECTION - GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD55818.1 LENGTH 197 SQ:AASEQ MGEPRRRMSAADRRDQLLDVARDIVVAEGFAAVGIDRVARIAGVARALIYQQFGDLTGLTTALLERETETALRGMLTVDWADADIDRVGRGILAYLHAAPISWRILLSPPEGGPALLRERVEIGRRYARAIGARHLSRYAGVPVDPDGPTQRLVHAALEELLRQHLADPAACPDELVLRYLRSLVAWAVRVEQGAPD GT:EXON 1|1-197:0| BL:SWS:NREP 1 BL:SWS:REP 10->53|TTGW_PSEPU|9e-05|36.4|44/134| SEG 56->74|ltglttalleretetalrg| SEG 123->134|igrryaraigar| BL:PDB:NREP 1 BL:PDB:REP 2->53|3g7rB|4e-05|42.3|52/199| RP:PDB:NREP 1 RP:PDB:REP 12->186|2dtzB|3e-08|7.4|175/182| HM:PFM:NREP 2 HM:PFM:REP 17->55|PF00440|1.9e-10|30.8|39/47|TetR_N| HM:PFM:REP 159->182|PF03765|0.00073|47.8|23/55|CRAL_TRIO_N| RP:SCP:NREP 1 RP:SCP:REP 12->55|1jt0A1|5e-10|18.2|44/71|a.4.1.9| HM:SCP:REP 1->84|1t33A1|1e-12|27.7|83/0|a.4.1.9|1/1|Homeodomain-like| OP:NHOMO 4 OP:NHOMOORG 4 OP:PATTERN -------------------------------------------------------------------- ---------------------------------1111-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 196 STR:RPRED 99.5 SQ:SECSTR #cHcccccHHHccHHHHHHHHHHHHHHccTTTccHHHHHHTTTccTTTccccHHHHHHHHHHHHHHHHHHHHHHHTTcccHHHHHHHHHHHHHHccccGGGHHHHHHHHTccccTTTTTTTHHHHHHHHHHHHHHHHHHTccccccHHHHHHHHHHHHHHHHHTTccccHHHHHHHHHHHHHHHHHTHHHHHcccHH DISOP:02AL 1-15, 192-197| PSIPRED cccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccc //