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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55829.1
DDBJ      :             putative aminotransferase
Swiss-Prot:             

Homologs  Archaea  66/68 : Bacteria  713/915 : Eukaryota  188/199 : Viruses  0/175   --->[See Alignment]
c.67.1
:449 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   22->445 2cinA PDBj e-145 66.2 %
:RPS:PDB   22->448 2cinA PDBj 1e-58 61.5 %
:RPS:SCOP  37->447 1d7rA  c.67.1.4 * 2e-53 22.1 %
:HMM:SCOP  14->448 1qj5A_ c.67.1.4 * 6.5e-86 32.9 %
:RPS:PFM   45->392 PF00202 * Aminotran_3 2e-34 36.2 %
:HMM:PFM   44->392 PF00202 * Aminotran_3 1.9e-69 29.7 330/339  
:BLT:SWISS 22->445 LAT_MYCTU e-144 66.2 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55829.1 GT:GENE BAD55829.1 GT:PRODUCT putative aminotransferase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1090329..1091678 GB:FROM 1090329 GB:TO 1091678 GB:DIRECTION + GB:PRODUCT putative aminotransferase GB:PROTEIN_ID BAD55829.1 LENGTH 449 SQ:AASEQ MTLELDRTSSGAENAQDVPATRVHDVLSAHLLADGFPLVLDLRASRGCLLVDARDGSTYLDMFGFFASNALGMNHPALADDSLFRAELATAAVNKPSNSDVYTVEMARFVATFARVLGDPRLPHLFFIDGGALAVENALKVAFDWKSRHNESRGRPADLGTKVLHLTGAFHGRTGYTMSLTNTEPVKTARFPKFDWPRIDTPYLAPGRDIEAAEAAALAQARRAFAENPHDIACFIAEPIQGEGGDRHLRPEFLRAMQRLCHEHDALVVLDEVQTGAGGTGTAWAYQQLGLAPDVVAFGKKTQVCGIMAGGRVDEVPENVFAVSSRLNSTWGGNLTDMVRARRILEVLERDRLIEASRPLGAHLLSRLTDLAAAHPAVDDPRGRGLMCAITLASTELRDAVVTALRDREHVLILGTGTRGIRFRPPLTVTVEQLDRAVDALDRVLTELA GT:EXON 1|1-449:0| BL:SWS:NREP 1 BL:SWS:REP 22->445|LAT_MYCTU|e-144|66.2|423/449| SEG 205->227|apgrdieaaeaaalaqarrafae| SEG 275->285|tgaggtgtawa| BL:PDB:NREP 1 BL:PDB:REP 22->445|2cinA|e-145|66.2|423/435| RP:PDB:NREP 1 RP:PDB:REP 22->448|2cinA|1e-58|61.5|426/435| RP:PFM:NREP 1 RP:PFM:REP 45->392|PF00202|2e-34|36.2|318/336|Aminotran_3| HM:PFM:NREP 1 HM:PFM:REP 44->392|PF00202|1.9e-69|29.7|330/339|Aminotran_3| GO:PFM:NREP 2 GO:PFM GO:0008483|"GO:transaminase activity"|PF00202|IPR005814| GO:PFM GO:0030170|"GO:pyridoxal phosphate binding"|PF00202|IPR005814| RP:SCP:NREP 1 RP:SCP:REP 37->447|1d7rA|2e-53|22.1|389/431|c.67.1.4| HM:SCP:REP 14->448|1qj5A_|6.5e-86|32.9|413/429|c.67.1.4|1/1|PLP-dependent transferases| OP:NHOMO 2987 OP:NHOMOORG 967 OP:PATTERN 11211123444444421221222112221-32111111111111111111222152422221117-12 2542411111112173434-37224B3333349444358642341132133331221-11334164966441111121--113-111123221211---22222251312---------------1111111111176645111441121112111111112-2123432112121112-2114333311-53455555433453533357446445744445221111115413333332333333323324-------1---2211-----221111-------111------------------------1--111-----5135-------1-132331---1-1--42222112232322222211-1211233411111436333312334222232232223-222222232A21855575B55A56443213272233477222222223--1124611111111-1---------------2122-14412777645787763777566679999474751131--11115511434343331-111421111111221222-45231221231121121211333----2333--1-111111----------1211111432142312243333333321122233222---13311--11153851555554544455-5555544555545555554777584514444344444444444443144441-223333233333---2-----1111233431112-221111-1115554444333433343596939757589C2--------23112122223422232112121111111-11-221111-------------------------------------21-1121-122- 11--332-1---1133455646476755522333335444244323255687881353334233433553333453313343134323-33-43325344354454-41595647344113452871537O5-455132-71443242218223245446BB39465566J45434432a22224467D6652233532 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 445 STR:RPRED 99.1 SQ:SECSTR ####cHHHHHHHHHHHTTcGGGHHHHHHTTcccccccccccTTTcccTEEEcTTTccEEEEccHHHHTcccccccHHHHTcHHHHHHHHHHHTccccTTTcccHHHHHHHHHHHHHHccTTccEEEEEccHHHHHHHHHHHHHHHHHHHHHHTTccTTcccEEEEETTccccccTTGGGTccccHHHHTTcccccccEEccccccccccHHHHHHHHHHHHHHHHHHcTTTEEEEEEccEEcTTTcEEccHHHHHHHHHHHHHTTcEEEEEcTTTTTTTTccccTHHHHTccccEEEEcGGGccEEEEEcGGGGGcTTcTTTcTTcccccccccHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHcTTcEEEEEETTEEEEEcccHHHHHHHHHHHHHTHTEEcEEETTTEEEEcccTTccHHHHHHHHHHHHHHHHHHH DISOP:02AL 3-5| PSIPRED ccccccccHHHHHHHHHcccccHHHHHHHHHcccccccEEEEEcccccEEEEccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccccEEEEcccccHHHHHHHHHHHHHHHccccccccccccccEEEEEEccccccHHHHHHHcccccccccccccccccEEccccccccccHHHHHHHHHHHHHHHHHHccccEEEEEEEEEccccccccccHHHHHHHHHHHHHcccEEEEEcccccccHHcccEEEEcccccccEEEEcHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccEEEEEccEEEEEEEEccccccHHHHHHHHHHccEEEEEccccEEEEEccccccHHHHHHHHHHHHHHHHHHc //