Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55832.1
DDBJ : hypothetical protein
Swiss-Prot:
Homologs Archaea 0/68 : Bacteria 7/915 : Eukaryota 0/199 : Viruses 0/175 --->[See Alignment]
:355 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB 235->342 3cfuB PDBj 2e-18 14.0 %
:RPS:PFM 247->340 PF11611 * TRF2 5e-05 34.1 %
:HMM:PFM 231->347 PF11611 * TRF2 3e-18 29.2 113/123
:HMM:PFM 130->193 PF03631 * Ribonuclease_BN 0.00063 23.8 42/258
:BLT:SWISS 1->77 SELPL_MOUSE 8e-04 34.8 %
:PROS 284->292|PS00995|TCP1_3
:TM
:REPEAT 3|25->34|35->54|55->74
:SEG
SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55832.1
GT:GENE BAD55832.1
GT:PRODUCT hypothetical protein
GT:DATABASE GIB00210CH01
GT:ORG nfar0
GB:ACCESSION GIB00210CH01
GB:LOCATION 1093324..1094391
GB:FROM 1093324
GB:TO 1094391
GB:DIRECTION +
GB:PRODUCT hypothetical protein
GB:PROTEIN_ID BAD55832.1
LENGTH 355
SQ:AASEQ MTGTTGTPAPVHREPVRARWVPPSAPAPDPLRHDPPAPEPLRHNPPAADPARGTPPAPDRARGIPPAADRVRGTPPASIPARRNPLVPAPARRNPPAPAPSRGTAPASIVRPVLPAPGARQWYLRRKASTQKAVRRTWGPAWPARRPGPVAPPPPRRRRRGGLVRKLLWATLLVVLAPFVLAVGCLAALAANSGDGGEPATGAPPPAAVVEEPPPGEPDPAGPVAGPAPAGTPVRDGKFEFRVAAMESGVPRVGLQTARGAFAIVTLAVRNISDQPKWFLPFGQKLVTGDGTVVEHDTTATAWQAVQHRLGHSFEVAPGASGTAVLVFDVPAHTAPAHLELHDFVLSGGVTVAVS
GT:EXON 1|1-355:0|
BL:SWS:NREP 1
BL:SWS:REP 1->77|SELPL_MOUSE|8e-04|34.8|69/100|
PROS 284->292|PS00995|TCP1_3|PDOC00610|
TM:NTM 1
TM:REGION 167->189|
NREPEAT 1
REPEAT 3|25->34|35->54|55->74|
SEG 80->102|parrnplvpaparrnppapapsr|
SEG 138->165|wgpawparrpgpvapppprrrrrgglvr|
SEG 170->191|atllvvlapfvlavgclaalaa|
SEG 194->234|gdggepatgapppaavveepppgepdpagpvagpapagtpv|
RP:PDB:NREP 1
RP:PDB:REP 235->342|3cfuB|2e-18|14.0|100/131|
RP:PFM:NREP 1
RP:PFM:REP 247->340|PF11611|5e-05|34.1|85/120|TRF2|
HM:PFM:NREP 2
HM:PFM:REP 231->347|PF11611|3e-18|29.2|113/123|TRF2|
HM:PFM:REP 130->193|PF03631|0.00063|23.8|42/258|Ribonuclease_BN|
OP:NHOMO 7
OP:NHOMOORG 7
OP:PATTERN -------------------------------------------------------------------- ----------------1--------1------11-11---------------------------------1---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
STR:NPRED 100
STR:RPRED 28.2
SQ:SECSTR ##########################################################################################################################################################################################################################################EETTEEEEEEEEE##ccccEccccccccEEEEE#EEEcccccEEEEGGGEEEEcTTcccccEEEcGGGTTcc#####cEEEEcTTcEEEEEEEEcccccccEEEEcHH#############
DISOP:02AL 8-183, 190-227|
PSIPRED cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccccHHccccccccEEEEEEEEEEccccccEEcccccEEEEccccEEccccccEEHHHHHcccHHHEEccccccEEEEEEEEcccccccEEEEEEcccccccEEEEEc
//
[GTOP]
