Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55836.1
DDBJ : hypothetical protein
Swiss-Prot:
Homologs Archaea 0/68 : Bacteria 25/915 : Eukaryota 0/199 : Viruses 0/175 --->[See Alignment]
a.4.5
:254 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB 7->50 1bibA PDBj 1e-05 18.6 %
:RPS:SCOP 7->50 1oyiA a.4.5.19 * 3e-04 18.2 %
:HMM:SCOP 7->182 2p4wA1 a.4.5.64 * 4.7e-18 31.4 %
:HMM:PFM 9->52 PF09339 * HTH_IclR 6.5e-07 36.4 44/52
:HMM:PFM 52->74 PF09998 * DUF2239 0.0009 47.8 23/187
:SEG
SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55836.1
GT:GENE BAD55836.1
GT:PRODUCT hypothetical protein
GT:DATABASE GIB00210CH01
GT:ORG nfar0
GB:ACCESSION GIB00210CH01
GB:LOCATION 1098594..1099358
GB:FROM 1098594
GB:TO 1099358
GB:DIRECTION +
GB:PRODUCT hypothetical protein
GB:PROTEIN_ID BAD55836.1
LENGTH 254
SQ:AASEQ MSDSWPRRRLLAILRGASEPLDAQELARITGQHVTTVRFHLDVLTKESLVRQFQQPPRGRGRPRIGYRAVQRTLGYQELAQVLAEQLGPDSRSRSEAAVAAGRAWGAKLDAEERRIETLADVREVTVGLLSELGFAPERDPSGEESDQVVIRMTGCPLRDLARTHTDVVCGVHLGLIEEVLDRSGERGAVNVRLHPFVEPELCVARLELARRAAVPIGAENEAEPALTPPSAGRVAPQLRNADPNVAKQSAQQW
GT:EXON 1|1-254:0|
SEG 51->68|rqfqqpprgrgrprigyr|
SEG 91->107|srsrseaavaagrawga|
SEG 201->215|elcvarlelarraav|
RP:PDB:NREP 1
RP:PDB:REP 7->50|1bibA|1e-05|18.6|43/294|
HM:PFM:NREP 2
HM:PFM:REP 9->52|PF09339|6.5e-07|36.4|44/52|HTH_IclR|
HM:PFM:REP 52->74|PF09998|0.0009|47.8|23/187|DUF2239|
RP:SCP:NREP 1
RP:SCP:REP 7->50|1oyiA|3e-04|18.2|44/62|a.4.5.19|
HM:SCP:REP 7->182|2p4wA1|4.7e-18|31.4|169/0|a.4.5.64|1/1|"Winged helix" DNA-binding domain|
OP:NHOMO 30
OP:NHOMOORG 25
OP:PATTERN -------------------------------------------------------------------- --------------11111-11--1111111121211-12----------------------3--1----1---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
STR:NPRED 50
STR:RPRED 19.7
SQ:SECSTR ccccHHHHHHHHHHTTTcccccHHHHHHHHTccHHHHHHHHHHHHHTTcc############################################################################################################################################################################################################
DISOP:02AL 1-4, 54-60, 106-118, 244-246, 248-254|
PSIPRED ccccHHHHHHHHHHHHccccccHHHHHHHHcccHHHHHHHHHHHHHcccEEEEEccccccccccEEEEEccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccEEEEEcccccccEEEEEccccHHHHHHcccHHHHHHHHHHHHHHHHHccccccEEEEEEccccccEEEEEEEHHHHccccccccccccccccccccccccHHHcccccHHHHHHHccc
//
[GTOP]
