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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55849.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  23/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.1
:227 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   10->67 2raeA PDBj 1e-09 41.4 %
:RPS:PDB   14->66 2dt5A PDBj 5e-12 13.2 %
:RPS:SCOP  18->63 1jt0A1  a.4.1.9 * 1e-12 30.4 %
:HMM:SCOP  13->86 2g7sA1 a.4.1.9 * 4.3e-15 43.2 %
:RPS:PFM   21->66 PF00440 * TetR_N 4e-10 58.7 %
:HMM:PFM   22->64 PF00440 * TetR_N 3e-20 55.8 43/47  
:BLT:SWISS 16->63 TCMR_STRGA 4e-09 54.2 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55849.1 GT:GENE BAD55849.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1109009..1109692 GB:FROM 1109009 GB:TO 1109692 GB:DIRECTION + GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD55849.1 LENGTH 227 SQ:AASEQ MSEESGRARVGVDPARFRLTVVDQALRLFADKGYEATTVDEIAEAAGISRRTFFRQFRSKEDVIFADHEAQLAAASAFLEAAQGDPWDAVCEAVVQVFERFTQWRDIAARRYRVVRRVPALREREIVTVFRYERLFTGYLRDRLPDSPDLARVQFTAAVTATHNYLLRRMVRGESDAGAADLRVELAAIPRGTERPAASDELVVAVFPRDLPPRRVADLLTRRLGSL GT:EXON 1|1-227:0| BL:SWS:NREP 1 BL:SWS:REP 16->63|TCMR_STRGA|4e-09|54.2|48/226| SEG 69->83|eaqlaaasafleaaq| SEG 105->122|rdiaarryrvvrrvpalr| BL:PDB:NREP 1 BL:PDB:REP 10->67|2raeA|1e-09|41.4|58/193| RP:PDB:NREP 1 RP:PDB:REP 14->66|2dt5A|5e-12|13.2|53/210| RP:PFM:NREP 1 RP:PFM:REP 21->66|PF00440|4e-10|58.7|46/47|TetR_N| HM:PFM:NREP 1 HM:PFM:REP 22->64|PF00440|3e-20|55.8|43/47|TetR_N| GO:PFM:NREP 2 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00440|IPR001647| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00440|IPR001647| RP:SCP:NREP 1 RP:SCP:REP 18->63|1jt0A1|1e-12|30.4|46/71|a.4.1.9| HM:SCP:REP 13->86|2g7sA1|4.3e-15|43.2|74/0|a.4.1.9|1/1|Homeodomain-like| OP:NHOMO 33 OP:NHOMOORG 23 OP:PATTERN -------------------------------------------------------------------- ----2----------1------------------1-1112-214-----------11---------11331--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-------------------------------------------1-------------1----------------------------1----------------------------------------------------------------------------1---------1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 216 STR:RPRED 95.2 SQ:SECSTR HcTTcHcccccccHHHHHHHHHHHHHHHHHHTTccEEcHHHHHHHHTccHHHHHHHHHHTTccccTHHHHHHHHHHHTTGGGcccHHHHHHHHHHHHHHccccTTTHHHHHHHHHHHTccHHHHHHHHHHHHHHHHHHHHHHHHHTccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHcccHHHHHHcccccc########### DISOP:02AL 1-20, 225-227| PSIPRED cccccccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccccHHHHHHHcccccccHHHHHHHHHHHccc //