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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55864.1
DDBJ      :             putative short chain dehydrogenase
Swiss-Prot:             

Homologs  Archaea  11/68 : Bacteria  499/915 : Eukaryota  144/199 : Viruses  0/175   --->[See Alignment]
c.2.1
:272 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   65->185 2rhrA PDBj 3e-17 39.3 %
:RPS:PDB   66->194 3ce6B PDBj 3e-20 7.8 %
:RPS:SCOP  66->185 1pwxA  c.2.1.2 * 4e-20 20.0 %
:HMM:SCOP  1->228 1zemA1 c.2.1.2 * 7.4e-61 41.7 %
:RPS:PFM   66->169 PF00106 * adh_short 3e-10 37.5 %
:HMM:PFM   6->166 PF00106 * adh_short 5.1e-30 31.2 157/167  
:BLT:SWISS 65->185 ACT3_STRCO 4e-16 39.3 %
:PROS 137->165|PS00061|ADH_SHORT
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55864.1 GT:GENE BAD55864.1 GT:PRODUCT putative short chain dehydrogenase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1120992..1121810) GB:FROM 1120992 GB:TO 1121810 GB:DIRECTION - GB:PRODUCT putative short chain dehydrogenase GB:PROTEIN_ID BAD55864.1 LENGTH 272 SQ:AASEQ MEISGKVAIVTGAGGGIGAALARRLAAGGARVVVADIDPTGAREVAEAIGAAAVPVVGDVADEQVIATMIERAESEFGPVDLYFANAGIGGGPGLDSTDAQWTAALEVNVLAHVRAARALMPGWLARGTGYFVATASAAGLLTQIGSAPYSVTKHAAVGFAEWLAVTYGDRGIRVSCVCPMGVDTRLLHGDLVPGNAEAAALAVKAVTTAGAVLTPEEVADVVIAGMAAEQFLILPHPEVLEMYRRKGADYDRWLAGMRRFQSALLGEGLSR GT:EXON 1|1-272:0| BL:SWS:NREP 1 BL:SWS:REP 65->185|ACT3_STRCO|4e-16|39.3|117/261| PROS 137->165|PS00061|ADH_SHORT|PDOC00060| SEG 7->35|vaivtgagggigaalarrlaaggarvvva| SEG 41->63|garevaeaigaaavpvvgdvade| SEG 197->215|aeaaalavkavttagavlt| BL:PDB:NREP 1 BL:PDB:REP 65->185|2rhrA|3e-17|39.3|117/256| RP:PDB:NREP 1 RP:PDB:REP 66->194|3ce6B|3e-20|7.8|129/485| RP:PFM:NREP 1 RP:PFM:REP 66->169|PF00106|3e-10|37.5|104/169|adh_short| HM:PFM:NREP 1 HM:PFM:REP 6->166|PF00106|5.1e-30|31.2|157/167|adh_short| GO:PFM:NREP 2 GO:PFM GO:0008152|"GO:metabolic process"|PF00106|IPR002198| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00106|IPR002198| RP:SCP:NREP 1 RP:SCP:REP 66->185|1pwxA|4e-20|20.0|120/252|c.2.1.2| HM:SCP:REP 1->228|1zemA1|7.4e-61|41.7|228/0|c.2.1.2|1/1|NAD(P)-binding Rossmann-fold domains| OP:NHOMO 1935 OP:NHOMOORG 654 OP:PATTERN -------1---------------------11--1------------21--211----------1--1- -2414-----11-1CA845-5A--76555554EDBD8CML172H-6-2-21131-112--32A-3149646---------1-B-----11-1-111-----2---3-2-11-------------111--31111--34421---333-12----1--------1--21121------------62111---311111111212221112113312121-12351-22222158----------------------1-12-----23---13-1---111--12111--------------1111111111111---111-------------------2-11----------1---11--2---------1112-1A445-----528592217886723332233338-674528285D7-744565D85BBB5925233A8366436--------555-1432111---------------------------28712-543553355834443447A5555358288CA9-24444122242335A1121--1241111111---52-2C-2-----------1-1-1--1-232343-1---------------------------1--32-1223-11111--12-----1---------12------1-211-12221222232-2222222322222222222424----1211111111111111132222222---22222222222---------11111-132---2-1---------11111----141222233255212131--111111111-122311111-11--11122222222-------2211--------------------------------------1----------1- ------1---1--12313-22131-1111-111-1-232323313212-13324-31112221--11-1111---111111-----------1--1----2--2---241E5954552131141974616I5-656314362462223114-34265A73551628221453245111-----22122F223--21222 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 187 STR:RPRED 68.8 SQ:SECSTR ###############################################################HHccccccHHHHHHccTTcEEEEccccGGccHHHHHHTTcEEEEEETTEEEEEcTTTccEEEEEGGGccHHHHHcccccHHHHHHcGGGccccEEEccHHHHHHHHHHHHHHHTcccccccHHHHHHHTccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccEEEcccTTHHHHHHHTTc###################### DISOP:02AL 269-272| PSIPRED ccccccEEEEEccccHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHHcccEEEEEEccccHHHHHHHHHHHHHHHccccEEEEcccccccccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccEEEEHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEEcccccccHHHHHHHccccHHHHHHHHHHcccccccccHHHHHHHHHHHHcHHcccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccc //