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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55866.1
DDBJ      :             putative branched-chain alpha-keto acid dehydrogenase component
Swiss-Prot:             

Homologs  Archaea  23/68 : Bacteria  575/915 : Eukaryota  192/199 : Viruses  0/175   --->[See Alignment]
c.36.1
:370 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   7->278 1w85G PDBj 6e-31 30.1 %
:RPS:PDB   12->341 3dvaA PDBj 2e-36 27.3 %
:RPS:SCOP  12->343 1dtwA  c.36.1.11 * 1e-27 27.4 %
:HMM:SCOP  30->356 1w85A_ c.36.1.11 * 7.2e-98 32.7 %
:RPS:PFM   72->270 PF00676 * E1_dh 1e-27 37.2 %
:HMM:PFM   43->310 PF00676 * E1_dh 1.1e-78 38.4 268/300  
:BLT:SWISS 9->278 ODPA_STAAR 3e-38 35.3 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55866.1 GT:GENE BAD55866.1 GT:PRODUCT putative branched-chain alpha-keto acid dehydrogenase component GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1122499..1123611 GB:FROM 1122499 GB:TO 1123611 GB:DIRECTION + GB:PRODUCT putative branched-chain alpha-keto acid dehydrogenase component GB:PROTEIN_ID BAD55866.1 LENGTH 370 SQ:AASEQ MPDKPAYPVQLIQPDGARVLDREHAALVADIGPHELRELFADMTVARRIDVEATALQRQGQLGLWPPLLGQEAAQVGSARALHPDDYVFCSYREAAVAYCRGVRPGELTRLWRGVAHHCWDPDAVGMTNPNIVVGAQGLHATGYAYAAHLDGAEIATIAYFGDGATSQGDIAEAFGFAASWSAPVVFFCQNNHWAISAPVRVQSATPLVRRAYGYGMPGVQVDGNDVLAVLAVTRQAVARARTGGGPSFIEALTYRMGPHTTADDPTRYRAAAETEEWTRRDPIDRLRRLLEREALWDAAFEREVGERADTAAAELRRATLEMPDPDPAQLFDHVYAAPHPLIEAERRAFAEYAAGDPGAAFARPEGASR GT:EXON 1|1-370:0| BL:SWS:NREP 1 BL:SWS:REP 9->278|ODPA_STAAR|3e-38|35.3|266/370| SEG 56->71|lqrqgqlglwppllgq| SEG 227->246|vlavlavtrqavarartggg| SEG 280->300|rrdpidrlrrllerealwdaa| SEG 344->355|eaerrafaeyaa| BL:PDB:NREP 1 BL:PDB:REP 7->278|1w85G|6e-31|30.1|269/364| RP:PDB:NREP 1 RP:PDB:REP 12->341|3dvaA|2e-36|27.3|330/365| RP:PFM:NREP 1 RP:PFM:REP 72->270|PF00676|1e-27|37.2|199/298|E1_dh| HM:PFM:NREP 1 HM:PFM:REP 43->310|PF00676|1.1e-78|38.4|268/300|E1_dh| GO:PFM:NREP 2 GO:PFM GO:0008152|"GO:metabolic process"|PF00676|IPR001017| GO:PFM GO:0016624|"GO:oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor"|PF00676|IPR001017| RP:SCP:NREP 1 RP:SCP:REP 12->343|1dtwA|1e-27|27.4|321/382|c.36.1.11| HM:SCP:REP 30->356|1w85A_|7.2e-98|32.7|327/0|c.36.1.11|1/1|Thiamin diphosphate-binding fold (THDP-binding)| OP:NHOMO 1474 OP:NHOMOORG 790 OP:PATTERN 11----1-2121222---111---3221--22----------------------------2111---- 11213-------1-22222-2---31222221322214533435122211113352241133312262322-----------5---1-111--1--11111222232132122222221211111---------2-45522---23111111111111111111112112121112111111122122---323333333332333333353343333355233222222242122222222222222233322-1-22-1---111111111111111111111112211111-1111111111111111112111111111-1---1111111-1-1111---------3------1-------112-3-12--411411111222112112112144443343343-11111211131122212152223223212224111112211111111133111111111111111--11111111111111111-23921-1-112222321111111131111-32122221--111-1-----2321--11----1----------121--2-2----------212-233-2221213-2----------------------1112211-11-211121211111111111111121---21--------------1------------------------------------1------------------------------------------1111111111--1---------------------------3-3333111112221-----------------1-----11-111111111111---------11111----------111111-1-11111111111111-------------11- 21--222-422-22222222333333322221222222222122221223223211222222211111111111111-1111111111-23222222222222224127255333312112333331727Q3-5363211332311212241122112234223321645524223231I1114474762652232222 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 342 STR:RPRED 92.4 SQ:SECSTR #HTccEEccccEEccccTTcccccGGGcccccHHHHHHHHHHHHHHHHHHHHHHHHHHTTccccccccTTcHHHHHHHHTTccTTcEEEccTTcHHHHHHTTccHHHHHHHHHTcGGGGcccTTcccccccccTTHHHHHHHHHHHHHHHHTccccEEEEEETGGGGcHHHHHHHHHHHHTTccEEEEEEEccEETTEEGGGTcccccGGGGGGTTccEEEEETTcHHHHHHHHHHHHHHHHTTcccEEEEEEccccccccccTcTTccccccTTGGGccccHHHHHHHHHHTTTcccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHTTcccccHHH########################### DISOP:02AL 1-2, 366-370| PSIPRED ccccccccEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEccccHHHHHHHHHHHcccccEEEEcHHHHHHHHHccccHHHHHHHHHcccccccccccccccccccHHHccHHHHHHHHHHHHHHccccEEEEEEEcccccHHHHHHHHHHHHHHcccEEEEEEcccccccccccccccccHHHHHHHccccEEEEccccHHHHHHHHHHHHHHHHHccccEEEEEEEEEcccccccccccccccHHHHHHHHHcccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccccHHHHHHHHHHHHHHHccccccccccccccc //