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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55867.1
DDBJ      :             putative branched-chain alpha-keto acid dehydrogenase component
Swiss-Prot:             

Homologs  Archaea  32/68 : Bacteria  646/915 : Eukaryota  192/199 : Viruses  0/175   --->[See Alignment]
c.36.1c.48.1
:324 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   4->314 2bp7B PDBj 9e-78 50.5 %
:RPS:PDB   4->323 1dtwB PDBj 5e-62 41.5 %
:RPS:SCOP  4->182 1dtwB1  c.36.1.7 * 1e-43 41.6 %
:RPS:SCOP  187->323 1dtwB2  c.48.1.2 * 2e-23 42.6 %
:HMM:SCOP  1->192 1w85B1 c.36.1.7 * 3.4e-70 49.0 %
:HMM:SCOP  187->322 1umdB2 c.48.1.2 * 7.3e-40 48.9 %
:RPS:PFM   18->174 PF02779 * Transket_pyr 7e-23 42.0 %
:RPS:PFM   195->310 PF02780 * Transketolase_C 7e-18 44.8 %
:HMM:PFM   5->177 PF02779 * Transket_pyr 6.2e-56 37.3 169/178  
:HMM:PFM   195->313 PF02780 * Transketolase_C 2.6e-40 54.6 119/124  
:BLT:SWISS 8->323 ODPB_LEIXX e-109 61.3 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55867.1 GT:GENE BAD55867.1 GT:PRODUCT putative branched-chain alpha-keto acid dehydrogenase component GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1123608..1124582 GB:FROM 1123608 GB:TO 1124582 GB:DIRECTION + GB:PRODUCT putative branched-chain alpha-keto acid dehydrogenase component GB:PROTEIN_ID BAD55867.1 LENGTH 324 SQ:AASEQ MITTFAGALNTGMRRALEDDPKVVLMGEDIGRLGGVFRVTDTLQKDFGDNRVIDTPLAESGIIGTAFGMALRGYRPVCEIQFDGFVYPAFDQIVSQVAKIHYRTGGKVSAPITIRIPFGGGIGSVEHHSESPEAYFAHTAGLRVVTPSTPADAYHMLRQAIAAPDPVIFFEPKRRYWDKADVDFDAPPELPLHRARVCRAGTDATVVAYGGTVAPALAAAEIAASEGHSLEVIDLRSLAPLDVDTVAESVTRTGRLVVTHEAPVFGGLGAEIAARITERCFYHLEAPVLRVGGYDIPYPPAKLEKHHLPDPDRILDAVDRSLAA GT:EXON 1|1-324:0| BL:SWS:NREP 1 BL:SWS:REP 8->323|ODPB_LEIXX|e-109|61.3|315/337| SEG 214->224|apalaaaeiaa| BL:PDB:NREP 1 BL:PDB:REP 4->314|2bp7B|9e-78|50.5|307/338| RP:PDB:NREP 1 RP:PDB:REP 4->323|1dtwB|5e-62|41.5|318/326| RP:PFM:NREP 2 RP:PFM:REP 18->174|PF02779|7e-23|42.0|150/172|Transket_pyr| RP:PFM:REP 195->310|PF02780|7e-18|44.8|116/122|Transketolase_C| HM:PFM:NREP 2 HM:PFM:REP 5->177|PF02779|6.2e-56|37.3|169/178|Transket_pyr| HM:PFM:REP 195->313|PF02780|2.6e-40|54.6|119/124|Transketolase_C| GO:PFM:NREP 2 GO:PFM GO:0003824|"GO:catalytic activity"|PF02780|IPR005476| GO:PFM GO:0008152|"GO:metabolic process"|PF02780|IPR005476| RP:SCP:NREP 2 RP:SCP:REP 4->182|1dtwB1|1e-43|41.6|178/188|c.36.1.7| RP:SCP:REP 187->323|1dtwB2|2e-23|42.6|136/138|c.48.1.2| HM:SCP:REP 1->192|1w85B1|3.4e-70|49.0|192/0|c.36.1.7|1/1|Thiamin diphosphate-binding fold (THDP-binding)| HM:SCP:REP 187->322|1umdB2|7.3e-40|48.9|135/137|c.48.1.2|1/1|TK C-terminal domain-like| OP:NHOMO 1858 OP:NHOMOORG 870 OP:PATTERN 11----1133233231-1111---2111-111----------------------11--112221--1- 11314-------1-22211-1---32111111333324743324122211114352241144313272322-------11215---211111-1--211433334432342222222222222211---1-2123-455221112522222222222222222222422323222311322122223312-434333333332333333364454333376334222222242222222222222222233322-1-22-1---111121111111111111111112211111-111111111111111111211111111121---1111111-1-23111-----2--3-212223121122-21323-14--511222222333223223223255554454454-11111211342123323274335434322446444443322222222233113111111111111--11111111111111111-36D41-1-112222321111111141111-32122221--111-1-----2421--21----1---------1231123231-1-21--1-53524552411212213----------------------1112211-11-2211223111321111121121231--21--1-----------1-------------------------------11--12------------------------------------------2323222222--2-1----2-11111111-11111-1---3-3333121112221-----------------1-----11-112211111222------2-221111----------111111-1-11111111111111--------1-121221 22--222-622-22222222222222222222222222222222222223223222222222211111111111111-1111111111-22222222222211222126242422112122122431318K3-4352222222332222222242333435523223621F32223242U3334387D72873442223 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 323 STR:RPRED 99.7 SQ:SECSTR #EEcHHHHHHHHHHHHHHHcTTcEEEETTTTTcTcTTcTTTTHHHHHcTTTEEEccccHHHHHHHHHHHHHTTccEEEEcccGGGcGGGHHHHHTTGGGHHHHTTcccccTEEEEEEEcccTTcTTcccccTHHHHHTcTTcEEEccccHHHHHHHHHHHHHccccEEEEEEGGGTTccccEEEcccccccTTccEEEEccccEEEEEcTTHHHHHHHHHHHHHHHcccEEEEEccccccccHHHHHHHHHHHccEEEEEEEEcTTcTHHHHHHHHHHHcTTTcccccEEEEEccccHcccTTHHHHcccHHHHHHHHHHHHTG PSIPRED ccccHHHHHHHHHHHHHHHcccEEEEEccccccccHHHHHHHHHHHcccccEEEccccHHHHHHHHHHHHHcccccEEEEEEHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEcccccccccccccHHHHHHHHHHcccEEEEEccHHHHHHHHHHHHHccccEEEEEEccccccccccccccccccccccEEEEEccccEEEEEccHHHHHHHHHHHHHHHccccEEEEEHHHHccccHHHHHHHHHHcccEEEEEcccccccHHHHHHHHHHHHHcccccccEEEEEcccccccHHHHHHHHcccHHHHHHHHHHHHcc //