[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55871.1
DDBJ      :             putative DNA-binding protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  5/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.35.1
:422 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   27->78 3f52E PDBj 3e-05 40.4 %
:RPS:PDB   27->78 2axuC PDBj 3e-09 20.0 %
:RPS:SCOP  27->77 1d1lA  a.35.1.2 * 1e-07 9.8 %
:HMM:SCOP  24->78 2b5aA1 a.35.1.3 * 3.3e-07 34.5 %
:HMM:PFM   30->78 PF01381 * HTH_3 4.2e-09 30.6 49/55  
:BLT:SWISS 27->78 Y465_MYCTU 2e-04 34.6 %
:BLT:SWISS 254->317 TNP7_ECOLX 5e-04 32.8 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55871.1 GT:GENE BAD55871.1 GT:PRODUCT putative DNA-binding protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1128038..1129306) GB:FROM 1128038 GB:TO 1129306 GB:DIRECTION - GB:PRODUCT putative DNA-binding protein GB:PROTEIN_ID BAD55871.1 LENGTH 422 SQ:AASEQ MAYAEIRVHRPVDSSSGSFSGVGVIEGAQLRTAREAAGWSLRAMAELVHFAPSYLSLIETGKRPVTREVVAAYELILGPGSLRAETPEPQGDRVPRVITSELPESLPAFLEFIADDLSRAYPKSRPDQLLAEIQWRIRGVRALLQGRTTLMEHRRLMVVLGWLSMLAAACHIDLGEGRAAAAQLWVAREVAIEAEHTEIDAWRAEIMARQHLALGEYLVAVVAAQIAQQAAPRGSYAMIQATAQEAAALARYGDKQDAYTALRTLARLVADLPTVEMAEHRFRFDTVQADSAMATTLAWLGDRAAESFARHVIRHIENSLYVRPRRLAAARLDLGLALLAAGRPEEAAHEAMTAVTSGCLVPADRLRLEEVVTGVEGVHAAAARPLREAFRSLYPTDAPSADASSADAFSATGCPAAPRRRP GT:EXON 1|1-422:0| BL:SWS:NREP 2 BL:SWS:REP 27->78|Y465_MYCTU|2e-04|34.6|52/474| BL:SWS:REP 254->317|TNP7_ECOLX|5e-04|32.8|64/100| SEG 12->24|vdsssgsfsgvgv| SEG 219->231|vavvaaqiaqqaa| SEG 237->250|amiqataqeaaala| SEG 323->348|rprrlaaarldlglallaagrpeeaa| SEG 397->411|dapsadassadafsa| BL:PDB:NREP 1 BL:PDB:REP 27->78|3f52E|3e-05|40.4|52/78| RP:PDB:NREP 1 RP:PDB:REP 27->78|2axuC|3e-09|20.0|50/295| HM:PFM:NREP 1 HM:PFM:REP 30->78|PF01381|4.2e-09|30.6|49/55|HTH_3| RP:SCP:NREP 1 RP:SCP:REP 27->77|1d1lA|1e-07|9.8|51/61|a.35.1.2| HM:SCP:REP 24->78|2b5aA1|3.3e-07|34.5|55/0|a.35.1.3|1/1|lambda repressor-like DNA-binding domains| OP:NHOMO 6 OP:NHOMOORG 5 OP:PATTERN -------------------------------------------------------------------- ------------------------------------2-----------------------11--1---1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 87 STR:RPRED 20.6 SQ:SECSTR ##########################HHHHHHHHHHTTccHHHHHTTTcccHHHHHHHTTTcccccHHHHHHHHHHHTHHHHHHHHHHHHHTcHHHHHHHHHcccHHHHHHHH##################################################################################################################################################################################################################################################################################################################### DISOP:02AL 1-3, 418-422| PSIPRED ccccEEEEEcccccccccEEEEEEEEcHHHHHHHHcccccHHHHHHHHHccHHHHHHHHcccccccHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccccccEEcHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccEEHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccc //