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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55873.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  1/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.5d.190.1
:186 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   2->182 3eetA PDBj 2e-10 23.0 %
:RPS:SCOP  1->33 1e2xA1  a.4.5.6 * 9e-05 21.2 %
:RPS:SCOP  70->181 2pkhA1  d.190.1.2 * 1e-10 22.5 %
:HMM:SCOP  69->180 2fa1A1 d.190.1.2 * 6.2e-08 32.4 %
:HMM:PFM   69->109 PF07702 * UTRA 3.7e-07 39.0 41/141  
:HMM:PFM   120->174 PF07702 * UTRA 0.00018 29.1 55/141  
:HMM:PFM   2->29 PF00392 * GntR 6.5e-05 39.3 28/64  
:BLT:SWISS 6->109 Y6150_RHIME 4e-06 30.6 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55873.1 GT:GENE BAD55873.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1130491..1131051) GB:FROM 1130491 GB:TO 1131051 GB:DIRECTION - GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD55873.1 LENGTH 186 SQ:AASEQ MSEIVIRKVIDLLLRQGLVYTIERRGTFVAARPTLVRVSPERQMEDPATTFGNESPHRVDDVRIERTTTLVPADDEVAGLLGINPGTEVEHIVTAVAELGRPVSISDSYQLPGTDVATATVLEETIADKVPAPTHAVWLKVPAGDLVKAIRQRFLRHGRILMVSDVSYPKDRYESFVFRMTLEPES GT:EXON 1|1-186:0| BL:SWS:NREP 1 BL:SWS:REP 6->109|Y6150_RHIME|4e-06|30.6|98/244| RP:PDB:NREP 1 RP:PDB:REP 2->182|3eetA|2e-10|23.0|174/238| HM:PFM:NREP 3 HM:PFM:REP 69->109|PF07702|3.7e-07|39.0|41/141|UTRA| HM:PFM:REP 120->174|PF07702|0.00018|29.1|55/141|UTRA| HM:PFM:REP 2->29|PF00392|6.5e-05|39.3|28/64|GntR| RP:SCP:NREP 2 RP:SCP:REP 1->33|1e2xA1|9e-05|21.2|33/73|a.4.5.6| RP:SCP:REP 70->181|2pkhA1|1e-10|22.5|111/141|d.190.1.2| HM:SCP:REP 69->180|2fa1A1|6.2e-08|32.4|111/0|d.190.1.2|1/1|Chorismate lyase-like| OP:NHOMO 1 OP:NHOMOORG 1 OP:PATTERN -------------------------------------------------------------------- ------------------------------------1-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 183 STR:RPRED 98.4 SQ:SECSTR ccHHHHHHHHHHHHHTTcEEEcccEEEEEccccccEEEEccccccccccHHHHHcccTTccEEEEEEEEEEEccHHHHHHHTccTTcEEEEEEEEEEETETTEEEEEEEEEHHHHTTcTTcTTcEEEEEEccHHHHHHHTccTTcEEEEEEEEEEETTEEEEEEEEEEETTTEEcEEcccccc### DISOP:02AL 44-46, 48-49, 184-186| PSIPRED ccEEEHHHHHHHHHHcccEEEEEccEEEEEccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHcccccccEEEEEEEEccccccccHHHHHHccccEEEEHHHHHHHHHHHccccHHEEEEcccccccEEEEEEEEccccEEEEEEEccccHHHHEEEEEEEEEcccc //