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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55881.1
DDBJ      :             putative methylmalonyl-CoA mutase
Swiss-Prot:             

Homologs  Archaea  32/68 : Bacteria  281/915 : Eukaryota  73/199 : Viruses  0/175   --->[See Alignment]
c.1.19c.23.6c.37.1
:1071 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   226->341 2qm7B PDBj 2e-09 35.2 %
:BLT:PDB   551->1070 3bicB PDBj 3e-71 38.1 %
:RPS:PDB   510->1070 1e1cA PDBj 4e-56 30.0 %
:RPS:SCOP  153->396 2p67A1  c.37.1.10 * 3e-25 21.6 %
:RPS:SCOP  493->1067 1e1cA1  c.1.19.1 * 4e-47 27.3 %
:HMM:SCOP  1->144 7reqA2 c.23.6.1 * 1e-38 35.9 %
:HMM:SCOP  193->362 1xjcA_ c.37.1.10 * 1.6e-22 28.0 %
:HMM:SCOP  488->1068 7reqA1 c.1.19.1 * 1.2e-146 39.0 %
:RPS:PFM   211->396 PF03308 * ArgK 8e-29 45.8 %
:RPS:PFM   548->1066 PF01642 * MM_CoA_mutase 1e-91 44.0 %
:HMM:PFM   546->680 PF01642 * MM_CoA_mutase 2e-19 37.4 131/516  
:HMM:PFM   704->1051 PF01642 * MM_CoA_mutase 2.2e-81 39.0 344/516  
:HMM:PFM   164->394 PF03308 * ArgK 1.3e-42 35.3 221/267  
:HMM:PFM   18->113 PF02310 * B12-binding 1.3e-11 24.0 96/121  
:BLT:SWISS 211->457 Y274_PYRHO 1e-12 28.8 %
:BLT:SWISS 549->1058 MUTA_CAEEL 6e-76 38.5 %
:COIL
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55881.1 GT:GENE BAD55881.1 GT:PRODUCT putative methylmalonyl-CoA mutase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1140522..1143737) GB:FROM 1140522 GB:TO 1143737 GB:DIRECTION - GB:PRODUCT putative methylmalonyl-CoA mutase GB:PROTEIN_ID BAD55881.1 LENGTH 1071 SQ:AASEQ MADSTLHQPAYPVRFVTSAALFDGHDAAINIMRRILQSQGAEVIHLGHNRAVHEVVAAAVEEDVQGVAVSSYQGGHVEYFEYLASALRDAGAGHVRVFGGGGGVIVPEEIERLARSGVRIFSPEDGQRLGLPGMINELIQTCDVDLTGERPAVEAVLAGERTALARVITCLQQDALPAADRDALLAAARDRTVPVLGITGTGGSGKSSLTDELVRRLRTDQQDKLRVAILAVDPTRRRGGGALLGDRIRMNSLDGTHVFFRSLATRGGHELPHDIDAVIAACKAAGYDLVILETPGIGQGDAAIVDHVDVAMYVMTPEFGAASQLEKIDMLDFADVVAINKFERRGGADAVRDVSRQLLRNREAFGADPADMPVFGTSAATFNDDGVTALYQHLLELLGARGLPVDEGVLPRVQTRVSTRFAQIIPTARVRYLAEIADTVRTYHARTRDQVAAAQRVQRLELVAAELPGDAAVADLLARARAELDPENAALLARWPEVAESYRGPEQVVRVRDREIRTTLRRESLSGSSIPRVALPRFTDHGELLRFLRSENLPGHFPFTAGVFPFKRDNEDPARMFAGEGDPFRTNRRFKVLSEHSEAKRLSTAFDSVTLYGRDPDERPDIYGKVGTSGVSIATVDDMKALYDGFDLTAPTTSVSMTINGPAPTILAFFLNTAIDQALDRFRAAEGREPTADEAADLRARTLATVRGTVQADILKEDQGQNTCIFSTEFSLRMMADIQEWFVRNKVRNFYSVSISGYHIAEAGANPISQLAFTLANGFTYVEAYLARGMHIDDFAPNLSFFFSNGMDPEYSVIGRVARRIWAIALRDKYGAAERSQKLKYHVQTSGRSLHAQEMNFNDIRTTLQALIAIYDNCNSLHTNAYDEAVTTPTEDSVRRALAIQLIINREWGLAMNENPLQGSFIIDELTDLAEEAVLTEFERISERGGVLGAMETGYQRGKIQDESMLYEHRKHDGSLPIIGVNTFRNPHGEPERTLELARATEREKQSQLDRVREFQRRHRTQAQAALARLEEVARTDENIFEVLMDAARVCSLQQVTETFFTVGGQYRRNV GT:EXON 1|1-1071:0| BL:SWS:NREP 2 BL:SWS:REP 211->457|Y274_PYRHO|1e-12|28.8|240/317| BL:SWS:REP 549->1058|MUTA_CAEEL|6e-76|38.5|481/744| COIL:NAA 2 COIL:NSEG 1 COIL:REGION 1020->1021| SEG 51->69|avhevvaaaveedvqgvav| SEG 91->106|gaghvrvfgggggviv| SEG 174->191|dalpaadrdallaaardr| SEG 197->210|gitgtggsgksslt| SEG 236->249|rrrgggallgdrir| SEG 470->482|daavadllarara| BL:PDB:NREP 2 BL:PDB:REP 226->341|2qm7B|2e-09|35.2|105/311| BL:PDB:REP 551->1070|3bicB|3e-71|38.1|486/715| RP:PDB:NREP 1 RP:PDB:REP 510->1070|1e1cA|4e-56|30.0|533/727| RP:PFM:NREP 2 RP:PFM:REP 211->396|PF03308|8e-29|45.8|177/265|ArgK| RP:PFM:REP 548->1066|PF01642|1e-91|44.0|489/503|MM_CoA_mutase| HM:PFM:NREP 4 HM:PFM:REP 546->680|PF01642|2e-19|37.4|131/516|MM_CoA_mutase| HM:PFM:REP 704->1051|PF01642|2.2e-81|39.0|344/516|MM_CoA_mutase| HM:PFM:REP 164->394|PF03308|1.3e-42|35.3|221/267|ArgK| HM:PFM:REP 18->113|PF02310|1.3e-11|24.0|96/121|B12-binding| GO:PFM:NREP 3 GO:PFM GO:0008152|"GO:metabolic process"|PF01642|IPR006099| GO:PFM GO:0016866|"GO:intramolecular transferase activity"|PF01642|IPR006099| GO:PFM GO:0031419|"GO:cobalamin binding"|PF01642|IPR006099| RP:SCP:NREP 2 RP:SCP:REP 153->396|2p67A1|3e-25|21.6|213/301|c.37.1.10| RP:SCP:REP 493->1067|1e1cA1|4e-47|27.3|545/559|c.1.19.1| HM:SCP:REP 1->144|7reqA2|1e-38|35.9|142/168|c.23.6.1|1/1|Cobalamin (vitamin B12)-binding domain| HM:SCP:REP 193->362|1xjcA_|1.6e-22|28.0|161/0|c.37.1.10|1/1|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 488->1068|7reqA1|1.2e-146|39.0|546/557|c.1.19.1|1/1|Cobalamin (vitamin B12)-dependent enzymes| OP:NHOMO 702 OP:NHOMOORG 386 OP:PATTERN 11----1111111111-------222221-22----------------------2222211112--11 32434-11111-1-13311-131132111113322221112355---1------------44822226542-----------2-----11221211---3-33323-133---------------3122211122144444---31-------------------------------------33333----3-----------------3-------3332---------31-------------------------------------------------------------------------------------------22-------------------------3--3-22122--21-223-2--3--3221-----1112212-122121111111-111-22222222222-111111111221265222222244222-------------213------------------------------1111------------1------12-------1111411111123111123212--3----------------3321722-----------2231524-5224232-2------------------------------------------------------------1----------------1111111111-11-11--11-1-111111----------2------------------1111--1-----------------------------------------------------------------------------------------------------------------1-444344------------------------------------22111-2----22 ----111-21----1--------------------------------------------------------------------------------------------2212111111111111112111161-1211--12-112111111111111122311211-----112---------1----1---1121221 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 683 STR:RPRED 63.8 SQ:SECSTR #############################################################################################################################################################################################################################HTTccEEEEEEcGGGGcccHHHHcccGGGcHTcTTTEEEcccccHHHHHHHHHHHHHHHHHHHTTccEEEEEEcccTTHHHHHHTTccEEEEEEccccGGGcccccTTHHHHccEEEEcc#######################################################################################################################################################################cHHHHHHHHHHHTcccccEEcTTccEEcccccGGGGTTcccTTccTTcTTcTTcccccHHHHcccEccEEccccHHHHHHHHHHHHHTTccccEEEEccHHHHTTccTTccTTTGGGTTccccccccHHHHHHHcTTccTHHTTcEEEEEccTTHHHHHHHHHHHHHHHTccGGGcEEccccEEEEccccccHHHGGcEEEEcccHHHHHHTTccccccHHHHHHHHHHHHHHHHHHHcTTEEcEEEEcHHHHHHTccHHHHHHHHHHHHHHHHHHHHHTTccGGGTGGGEEEEEEEcccHHHHHHHHHHHHHHHHHHHTTccccGGGGcccEEEEEccTTcccccTTHHHHHHHHHHHHHHHHTccEEEcccTTTTTccccHHHHHHHHHHHHHHHHTccccccccTTTTcHHHHHHHHHHHHHHHHHHHHHHHTTcHHHHHHTTHHHHHHHHHHHHHHHHHHHTcccccTTTcccccccccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccTTcGGGcHHHHHHHHHHTccHHHHHHHHHHHHccccccc DISOP:02AL 1-3, 5-7| PSIPRED cccccEEcccccEEEEEEEEccccHHHHHHHHHHHHHHcccEEEEccccccHHHHHHHHHHccccEEEEHHHHcccHHHHHHHHHHHHHccccccEEEEEccccccHHHHHHHHHcccEEEccccHHHHHHHHHHHHHHHHccccccccccHHHHHHcccHHHHHHHHHHcccccccHHHHHHHHHcccccccEEEEEEccccccHHHHHHHHHHHHHHcccccEEEEEEEEccccccccccccHHHHHHHHcccccEEEcccccccccHHHHHHHHHHHHHHHccccEEEEEcccccccHHHHHcccEEEEEEEEcccccHHHHccccHHEEccEEEEEccccHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEcccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccHHHHHHHHHHHHHccccccEEHEEcccHHccccccHHHHHHccccccccccccHHHHHHHHHcccccccEEEEEEEEccHHHHHHHHHHHHHHHHcccHHHHcccHHHHHHHHHHHccccHHHHcHHHcccHHHHHHHcccccccccccHHHHHHHHHHHHHccccccEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHcccEEEEEEccccHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEccccccHHHHHHHHHHHHHHHHHHHHccccEEEccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccHHHHHHHHHHHHcHHcccc //