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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55890.1
DDBJ      :             hypothetical protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  37/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
:230 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   77->211 3bt5A PDBj 1e-08 41.3 %
:RPS:PDB   49->126 3bt5A PDBj 1e-08 30.8 %
:RPS:PFM   58->107 PF03713 * DUF305 4e-07 46.0 %
:RPS:PFM   167->211 PF03713 * DUF305 4e-04 42.2 %
:HMM:PFM   55->107 PF03713 * DUF305 1.3e-21 50.9 53/53  
:HMM:PFM   167->219 PF03713 * DUF305 4.2e-15 37.7 53/53  
:HMM:PFM   3->39 PF06724 * DUF1206 0.00091 29.7 37/73  
:BLT:SWISS 55->107 YL153_MIMIV 2e-04 30.2 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55890.1 GT:GENE BAD55890.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1153069..1153761) GB:FROM 1153069 GB:TO 1153761 GB:DIRECTION - GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAD55890.1 LENGTH 230 SQ:AASEQ METSAEQGFGAQVRRQRGALLVLGALGAILLGIAIGALIRLPLDGDPQPDPNAVDIGFLQDMSVHHTQAVEMAGIALLRSTDTEVRRIAYDILTTQQSQVGRMQGWLQLWDQPVQAVDGYMGWMAETGGHGHGGQADGDSGPVSAMPGMATREELNALRDASSPAADTLFLSLMLRHHQGGMPMMEYAAEHAATTAVRTLAAGMVASQRNESDLLTTMLTARGGTPLPLN GT:EXON 1|1-230:0| BL:SWS:NREP 1 BL:SWS:REP 55->107|YL153_MIMIV|2e-04|30.2|53/100| TM:NTM 1 TM:REGION 20->42| SEG 12->41|qvrrqrgallvlgalgaillgiaigalirl| SEG 128->141|gghghggqadgdsg| BL:PDB:NREP 1 BL:PDB:REP 77->211|3bt5A|1e-08|41.3|104/151| RP:PDB:NREP 1 RP:PDB:REP 49->126|3bt5A|1e-08|30.8|78/151| RP:PFM:NREP 2 RP:PFM:REP 58->107|PF03713|4e-07|46.0|50/53|DUF305| RP:PFM:REP 167->211|PF03713|4e-04|42.2|45/53|DUF305| HM:PFM:NREP 3 HM:PFM:REP 55->107|PF03713|1.3e-21|50.9|53/53|DUF305| HM:PFM:REP 167->219|PF03713|4.2e-15|37.7|53/53|DUF305| HM:PFM:REP 3->39|PF06724|0.00091|29.7|37/73|DUF1206| OP:NHOMO 68 OP:NHOMOORG 37 OP:PATTERN -------------------------------------------------------------------- --1-----------1------3----------31124423-11231---11-216-----211-2122231-----------1----------------------------------------------------------------------1---------------1-------------1---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2-------------------------------------------------------------------------------------------------------------------------1----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 163 STR:RPRED 70.9 SQ:SECSTR ################################################ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHTccccccccHHHHHHT###########cccccccHHTTcccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHGGGGcHHHHHcccHHHHHHHHHHHHHHHHHH#HHHHHHHHTT####### DISOP:02AL 1-12, 39-53, 113-159, 229-230| PSIPRED cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHcccHHcccccccccccHHHHHHHHHccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc //