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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55901.1
DDBJ      :             hypothetical protein
Swiss-Prot:             

Homologs  Archaea  67/68 : Bacteria  790/915 : Eukaryota  143/199 : Viruses  0/175   --->[See Alignment]
d.115.1
:234 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   33->222 2eqaA PDBj 1e-26 33.0 %
:RPS:PDB   37->118 3c9dA PDBj 2e-10 12.2 %
:RPS:PDB   138->213 2e6gH PDBj 3e-15 15.3 %
:RPS:SCOP  17->223 1jcuA  d.115.1.1 * 2e-45 27.0 %
:HMM:SCOP  15->222 1jcuA_ d.115.1.1 * 8.1e-58 41.0 %
:RPS:PFM   36->210 PF01300 * Sua5_yciO_yrdC 8e-26 45.7 %
:HMM:PFM   36->210 PF01300 * Sua5_yciO_yrdC 1.3e-51 44.0 175/179  
:BLT:SWISS 14->230 Y1301_MYCTU 3e-80 65.4 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55901.1 GT:GENE BAD55901.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1166534..1167238 GB:FROM 1166534 GB:TO 1167238 GB:DIRECTION + GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAD55901.1 LENGTH 234 SQ:AASEQ MVERARSRDRMVAVSTVYDCADPDSRAAGLTAATSALKSGRLVVMPTDTLYGLAADAFDSTAVAELLAAKRRGRDMPVPVLVGSWNTIDGLVFSVRPQARDLIRAFWPGGLSLVVQQAPSLAWDLGDTRGTVMLRMPLHPVALDLLRDVGPLAVSSANVSGQPPATTAAEAREQLGSLVSVYLDGGPAAHAVASTIVDLTADRPRILREGAVSAAEIAEVLGMSPDELTGTAAR GT:EXON 1|1-234:0| BL:SWS:NREP 1 BL:SWS:REP 14->230|Y1301_MYCTU|3e-80|65.4|217/217| BL:PDB:NREP 1 BL:PDB:REP 33->222|2eqaA|1e-26|33.0|188/327| RP:PDB:NREP 2 RP:PDB:REP 37->118|3c9dA|2e-10|12.2|82/208| RP:PDB:REP 138->213|2e6gH|3e-15|15.3|72/229| RP:PFM:NREP 1 RP:PFM:REP 36->210|PF01300|8e-26|45.7|175/178|Sua5_yciO_yrdC| HM:PFM:NREP 1 HM:PFM:REP 36->210|PF01300|1.3e-51|44.0|175/179|Sua5_yciO_yrdC| RP:SCP:NREP 1 RP:SCP:REP 17->223|1jcuA|2e-45|27.0|204/208|d.115.1.1| HM:SCP:REP 15->222|1jcuA_|8.1e-58|41.0|205/208|d.115.1.1|1/1|YrdC/RibB| OP:NHOMO 1155 OP:NHOMOORG 1000 OP:PATTERN 11111111111111111111111111111111111111111111111111111111111111111-11 2221111111111111111-11111111111111111111111111111111111111112211111111211111111111---111111111111--1211--11111111111111111111111111111111111111111232222222111-1111231222221-11111--11111-111111111111111111111111111111111111111111111111222222122222211111111111111111111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111111111111111111111111-211111-11111111111111111111111111111-11-11-1111111111112111111111-111111111111111111111111111111111111111111111111-111111111111111112222222111122221111122222222-12221111111111122121113--------122111122211111-1--1111111111112111112-------------------------11-121121111-2111111111111111111--12111------11112111111111111-1111111111111111111111212221111111111111111111111111-222222212222--1-111112222111-----1---1111-21-------1---2111112121322221111----------11112222211122-1111111111111--21111122131111111-11111------------------1-11111111111111 --1111--211111121111111111111111111111-11-11-111111111--1--111111111-1-11111111111111111-121111111111211111121735422-1-------------------1--1------1-----1122131221131-1-111-12111-1-111---111-12121111 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 193 STR:RPRED 82.5 SQ:SECSTR #############################HHHHHHHEcccEEEEccccccccGGGTTTcTTTcccTTcHHHHHHHHHHHTcHHHHTTcccccTTHHHHHHHHHHTHHHHHHHHHHHHHTTccHHHHTTccEEEEEccHHHHHHHHTTccEEEcEEcccccccccEEEEEcccccTTcccEEEEEccHHccccHHHHHHHHHcccccEEEEEEEHHHHHHHcT############ DISOP:02AL 1-7, 228-229, 231-234| PSIPRED ccccccccHHHcccHHEEEccccccHHHHHHHHHHHHHcccEEEEEccccEEEEEccccHHHHHHHHHHHcccccccEEEEEccHHHHHHHHHcccHHHHHHHHHHccccEEEEEEccccccHHHcccccEEEEEccccHHHHHHHHHHcccEEEEcccccccccccHHHHHHHHcccEEEEEEccccccccccEEEEEccccEEEEEcccccHHHHHHHHccccccccccccc //