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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55922.1
DDBJ      :             putative thioredoxin
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  231/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
c.47.1
:278 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   27->125 1w4vF PDBj 2e-06 28.9 %
:RPS:PDB   23->125 2eiqA PDBj 3e-12 20.8 %
:RPS:SCOP  23->130 1qgvA  c.47.1.8 * 1e-12 9.3 %
:HMM:SCOP  23->126 1a8lA2 c.47.1.2 * 5.9e-16 21.4 %
:RPS:PFM   40->121 PF00085 * Thioredoxin 8e-04 24.4 %
:HMM:PFM   57->123 PF00085 * Thioredoxin 6.7e-08 22.4 67/104  
:BLT:SWISS 23->264 Y1359_MYCBO 8e-46 47.9 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55922.1 GT:GENE BAD55922.1 GT:PRODUCT putative thioredoxin GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1190538..1191374 GB:FROM 1190538 GB:TO 1191374 GB:DIRECTION + GB:PRODUCT putative thioredoxin GB:PROTEIN_ID BAD55922.1 LENGTH 278 SQ:AASEQ MDLSSLKQPPAGASGGAAGGYAVSEADFETKVLRRSLQVPVVVALYSQRSPGSVELVRTLERMVAADGGTWDLATVEAEANMRIAQALRVQGIPTVIAIAAGQPLADFEGAQPEPQVRQWIDAVVQAVAGKLEGDGGEPQPQEDPRFVAAEEALERGDMAAAEAAYEQILAAEPNNTEAKGALRQLRFLARAQQVPADAVATADADPANVDAAIAAADLELLNQQPEAAFDRLIAVVKRSAGDDRTKARTHLLELFELFDQAEPFVVAARRKLAAALY GT:EXON 1|1-278:0| BL:SWS:NREP 1 BL:SWS:REP 23->264|Y1359_MYCBO|8e-46|47.9|242/304| SEG 11->22|agasggaaggya| SEG 153->173|alergdmaaaeaayeqilaae| SEG 192->218|aqqvpadavatadadpanvdaaiaaad| SEG 266->277|vvaarrklaaal| BL:PDB:NREP 1 BL:PDB:REP 27->125|1w4vF|2e-06|28.9|97/108| RP:PDB:NREP 1 RP:PDB:REP 23->125|2eiqA|3e-12|20.8|101/107| RP:PFM:NREP 1 RP:PFM:REP 40->121|PF00085|8e-04|24.4|82/103|Thioredoxin| HM:PFM:NREP 1 HM:PFM:REP 57->123|PF00085|6.7e-08|22.4|67/104|Thioredoxin| GO:PFM:NREP 1 GO:PFM GO:0045454|"GO:cell redox homeostasis"|PF00085|IPR013766| RP:SCP:NREP 1 RP:SCP:REP 23->130|1qgvA|1e-12|9.3|108/130|c.47.1.8| HM:SCP:REP 23->126|1a8lA2|5.9e-16|21.4|103/0|c.47.1.2|1/1|Thioredoxin-like| OP:NHOMO 232 OP:NHOMOORG 232 OP:PATTERN -------------------------------------------------------------------- ---1111111111111111-111111111111111111111111-1-11111-1-1-1--11111111111-----------------------------------------------------------------11111--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------111--------------------------------1--1----1--11---1-----------1111111-1---------11--111----------------------------------------1111111---1--111111111111-11--11---1111----1---1---------------------------------------------------------------------------------1------11111-1111111111111----1--------11-11111111111111-11111111-11111111111111111111-11111111111111-111111--111111111111---------------11-----------------------------------1---------------------------------11111111111111---------------------------------------------------------1- ------------------------------------------------------------------------------------------------------------1------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 126 STR:RPRED 45.3 SQ:SECSTR ######################ccGGGccccccccccTcEEEEEEEcTTcHHHHHHHHHHHHHHHHTTTTcEEEEEETTTcTTHHHHTTcccccEEEEEETTEEEEEEEccccHHHHHHHHHHHcHHTccccEEEcccGGGHHG####HHHc############################################################################################################################## DISOP:02AL 5-19, 128-139| PSIPRED cccccccccccccccccccEEEEcHHHHHHHHHHccccccEEEEEEcccccHHHHHHHHHHHHHHHccccEEEEEEEccccHHHHHHcccccccEEEEEEccEEEHHHHccccHHHHHHHHHHHHHHHccccHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHc //