[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55924.1
DDBJ      :             putative alpha-amylase
Swiss-Prot:             

Homologs  Archaea  1/68 : Bacteria  217/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
b.1.5c.1.8
:669 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   219->435 3dhuA PDBj 2e-20 36.0 %
:RPS:PDB   198->657 2aaaA PDBj 3e-34 13.5 %
:RPS:SCOP  21->95 1g0dA3  b.1.5.1 * 3e-06 16.0 %
:RPS:SCOP  194->532 1bagA2  c.1.8.1 * 1e-34 12.9 %
:HMM:SCOP  199->558 1gjwA2 c.1.8.1 * 2.1e-79 29.3 %
:RPS:PFM   5->192 PF11896 * DUF3416 9e-28 43.2 %
:RPS:PFM   281->428 PF00128 * Alpha-amylase 2e-10 29.7 %
:HMM:PFM   4->192 PF11896 * DUF3416 9e-63 47.6 185/187  
:HMM:PFM   226->416 PF00128 * Alpha-amylase 1.4e-07 25.6 168/316  
:BLT:SWISS 3->665 GLGE_MYCS2 0.0 66.2 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55924.1 GT:GENE BAD55924.1 GT:PRODUCT putative alpha-amylase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1193630..1195639) GB:FROM 1193630 GB:TO 1195639 GB:DIRECTION - GB:PRODUCT putative alpha-amylase GB:PROTEIN_ID BAD55924.1 LENGTH 669 SQ:AASEQ MHVTGRIAIDDTAPSIPGGRPAKAVVGEVFPVRAVVWREGHDAVAATLAVRGPGATRPTRIRMTPDPEPDVFNATFIPNTPGTWTFRIEGWGDPIATWRHAVEAKLAVGQSAADLANDLELGARLLERAAQALPKAKFEKLRAAAAALRSDEQLPARVAPAFGAEVAEILRATPLRDLVTRGPQHCVAVERPRALFGSWYEFFPRSTGGRDAEGRPVHGTFATAAKELPRIAGMGFDVVYLPPIHPIGEVNRKGRNNSLVAEPGDVGSPWAIGSKDGGHDAVHPALGTEADFAEFVATAAELGLEVALDLALQCAPDHPWVREHPEWFTTLPDGTIAYAENPPKKYQDIYPVNFDNDPDGLYAEVLRIVRHWIGLGVKIFRVDNPHTKPADFWEWLIATVRKDDPDVVFLSEAFTRPARLYGLARRGFSQSYTYFTWRVAKWELTEFGNELAAKADEARPNLFVNTPDILHESLQHGGPGMFAIRAVLAATLSPTWGVYSGFELFEHQAVRPGSEEYLDSEKYELRPRDFAGALARGESLEPWLTRLNEIRRAHPALQQLRCLHFHHVDNDALIAYSKFDPVSGDAVLTIVNLNPFGPEEGFISVDLPAIGREWHDHPVVFDEVSGEEYHWGQTNWVRLDPARAVAHIIALPPVPAALRTPLAHRRSLR GT:EXON 1|1-669:0| BL:SWS:NREP 1 BL:SWS:REP 3->665|GLGE_MYCS2|0.0|66.2|663/697| SEG 119->133|lelgarlleraaqal| SEG 141->149|lraaaaalr| BL:PDB:NREP 1 BL:PDB:REP 219->435|3dhuA|2e-20|36.0|197/422| RP:PDB:NREP 1 RP:PDB:REP 198->657|2aaaA|3e-34|13.5|430/476| RP:PFM:NREP 2 RP:PFM:REP 5->192|PF11896|9e-28|43.2|185/188|DUF3416| RP:PFM:REP 281->428|PF00128|2e-10|29.7|148/296|Alpha-amylase| HM:PFM:NREP 2 HM:PFM:REP 4->192|PF11896|9e-63|47.6|185/187|DUF3416| HM:PFM:REP 226->416|PF00128|1.4e-07|25.6|168/316|Alpha-amylase| GO:PFM:NREP 3 GO:PFM GO:0003824|"GO:catalytic activity"|PF00128|IPR006047| GO:PFM GO:0005975|"GO:carbohydrate metabolic process"|PF00128|IPR006047| GO:PFM GO:0043169|"GO:cation binding"|PF00128|IPR006047| RP:SCP:NREP 2 RP:SCP:REP 21->95|1g0dA3|3e-06|16.0|75/101|b.1.5.1| RP:SCP:REP 194->532|1bagA2|1e-34|12.9|319/347|c.1.8.1| HM:SCP:REP 199->558|1gjwA2|2.1e-79|29.3|341/572|c.1.8.1|1/1|(Trans)glycosidases| OP:NHOMO 235 OP:NHOMOORG 218 OP:PATTERN -------------------------------------------------------------1------ 1----11111111-11111-11--1111111112221111121111111111111111----111-122111111111----1----------------2-1112--12----------------212211221-1111------1-------1----------------------------------------------------------------------1----------------------------------1----11----------------------------------------------------------------------------------------1-------1------------------------1--11111111------------111111111-1----111-111----1-1---1111-----------1---1-11------------------------------1-----1--1111-111-111111211111-111111---111--1-----11---1-1-1------------11--1-1-1---------111--------1-1---------------------------------1----1-1----------------------1---------------------------------------------------------------------------------------------------------1-------11--------------------1-11111111111111111--------------------------11111111------------------------1--------------------------11--1-11122- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 656 STR:RPRED 98.1 SQ:SECSTR ##EEEEEEEcccccTcccccGGGcccEEEcTTcccEETTcTTcEEEEEccccTTcccEEEEEcccccccEEEEEEEETcEccccEEEEccccccEEEEEccccccccGGGTTccEEEEEEEETTEEEEEEEEccEEcccccEcccEETTEEccGGGccccEEEEEEEcccccccccccGGGcHHHHcTTcTTccTcccEEEccHHHccccGGGcccccccHHHHHHTHHHHHTTTccEEEEcccEEEcccTTTTcEcccccccccTTcccTTcccEEEEEEEcTTTccHHHHHHHHHHHHTTTcEEEEEEcccccccccGGGccGGGccccccGGGcccccccccTTcHHHHHHEccccTTcHHHHHHHHHHHHHHHHHHTccEEEEcccTTccGGGHHHHHHHHTcEEEEccccccHHHHGGGGGTccEEccHHHHHHHHHHHHHHHHHHHHcccGGGcEEccccTTcccGGGTcccHHHHHHHHHHHHHcccEEEEETTTTTTccEETccccTTTTTcccGGGGTTcEcccccTTcHHHHHHHHHHHHHHHHHHHcTTTTccEEEEEETTEEEEEEccTEETTcEEEEEEccccccTTcEccEEEEEccccccTTcEEEETTTTEEEEccTTccEEEEcTTccEEEEEHHHHTTcc########### DISOP:02AL 1-2, 664-669| PSIPRED ccEEEEEEEccccEEEEccEEEEEEEccEEEEEEEEEHHHHHEEEEEEEEEccccccHHHHHHHccccccEEEEEEccccccEEEEEEEEcccccccccccHHHHcccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccccHHHHHHccHHHHHHHHHHccccccccccccccccccccccccEEEEEEcccccccccccccccccHHHHHHHHHHHHHccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccEEEEEEcccccccccHHHHccccccccccccccccccccccccccEEEccccccHHHHHHHHHHHHHHHHccccEEEEccHHHccHHHHHHHHHHHHHHcccEEEEEEEcccHHHHHHHHHccccccccHHHHcccHHHHHHHHHHHccHHHHHccccccccccccHHHHHcccHHHHHHHHHHHHHccccccccccHHHHccccccccccccccccccccccccccHHHHcccHHHHHHHHHHHHHHcccHHHccccEEEEEEccccEEEEEEEEcccccEEEEEEEccccccccEEEEEEcHHHcccccccEEEEEEEcccccccccEEEEEEcccccEEEEEEEccccccccccccHHcccc //