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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55926.1
DDBJ      :             putative transporter
Swiss-Prot:             

Homologs  Archaea  24/68 : Bacteria  599/915 : Eukaryota  75/199 : Viruses  0/175   --->[See Alignment]
:453 amino acids
:PSIPRED
:DISOPRED
:RPS:PFM   27->413 PF00860 * Xan_ur_permease 2e-64 48.1 %
:HMM:PFM   29->411 PF00860 * Xan_ur_permease 3.2e-39 21.9 374/389  
:BLT:SWISS 16->438 PBUG_BACSU e-107 51.7 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55926.1 GT:GENE BAD55926.1 GT:PRODUCT putative transporter GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1198526..1199887 GB:FROM 1198526 GB:TO 1199887 GB:DIRECTION + GB:PRODUCT putative transporter GB:PROTEIN_ID BAD55926.1 LENGTH 453 SQ:AASEQ MATDAQPRGLSRLDDYFGITRTGSTVRREIMAGTVTFLAMSYVLAVNPGILGDGGALGDKGIPMQAVFTATAVAAVFGTLVMGLWARYPIALAPGMGLNAFFAYSVVLGMGIPWQVALSGTFLSGVIFFVLAVTKVRERILDAIPLQLKLAVGAGIGLFVAFLGLKNAGIVASSEATFVTLGDFTEGRTLLALFGLVVTIVFLVKGWHGAVLYGIVLTAVLGIVTGLVDLPSGVAALPRGLDQTFGQAIIHLPDAFTAQMAVVVLTMLFVDFFDASGTLIGVANQAGLLDKQGKLPRAASAFAADSVGTTAGAVIGTSTTTAYVESTAGVTAGGRTGLTAVTTAGWFLLAMFCYPIFSVVAASGEVTAPALIVVGILMARSLGQIEWTALEYSIPAFITIIMMPLTYSIANGLAMGMVFYPIVMAARGRIREVHPAMWALLVVFLGYFFFLAE GT:EXON 1|1-453:0| BL:SWS:NREP 1 BL:SWS:REP 16->438|PBUG_BACSU|e-107|51.7|420/440| TM:NTM 11 TM:REGION 30->52| TM:REGION 63->85| TM:REGION 91->113| TM:REGION 151->173| TM:REGION 213->235| TM:REGION 255->277| TM:REGION 304->326| TM:REGION 340->362| TM:REGION 366->388| TM:REGION 399->421| TM:REGION 432->453| SEG 66->77|avftatavaavf| SEG 440->451|llvvflgyfffl| RP:PFM:NREP 1 RP:PFM:REP 27->413|PF00860|2e-64|48.1|376/381|Xan_ur_permease| HM:PFM:NREP 1 HM:PFM:REP 29->411|PF00860|3.2e-39|21.9|374/389|Xan_ur_permease| GO:PFM:NREP 4 GO:PFM GO:0005215|"GO:transporter activity"|PF00860|IPR006043| GO:PFM GO:0006810|"GO:transport"|PF00860|IPR006043| GO:PFM GO:0016020|"GO:membrane"|PF00860|IPR006043| GO:PFM GO:0055085|"GO:transmembrane transport"|PF00860|IPR006043| OP:NHOMO 1153 OP:NHOMOORG 698 OP:PATTERN -------1---------1-------11111111--11-11111-----------1111111------- -11-11111111111------1---1------11111111----1111111132211---11111123231111111111111-----------11-----------1-----------------11111111111--------11--11---------------1--1-1-------------11--11--1244444444344444412222244421222233333332211111111111111111111242111113332211114222221111111111111111111111111111111111111111111111111223333333353512114333121111111-11121-11111111131---111--------11---------11121111111-11-11111--1-------1---221------1-------11111111-111-11------------------------------1----1111113333332111122222222123222222--222-----1---1--1-----121111111---------11---1-111--1-1111-111111-----111-1111111-1111111-11-1--3--11-1-1111222212622222242222--1----------22422224554444444-3444444444344444442333221122222222222222222313233321-222222222222---------1111---21222222111-122221112111-111-222222222222221111111111111122311111112321111111----------1------22212-2-1-1----1---------------1----1-11111111-1- -------------11-133111111111111211-111211111112322344312222222------------------------11-1-41111------1223--2------------------------------------------------------3---------1--21-----4312353231-1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 1-15| PSIPRED cccccccccHHHHHHHEEHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccEEEccccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccccEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHcccHHHEEEcHHHHHHccccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccc //