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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55938.1
DDBJ      :             hypothetical protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  81/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
f.51.1
:230 amino acids
:PSIPRED
:DISOPRED
:RPS:SCOP  40->201 2ic8A1  f.51.1.1 * 2e-06 16.2 %
:HMM:SCOP  37->218 2nr9A1 f.51.1.1 * 4.3e-21 30.6 %
:HMM:PFM   79->216 PF01694 * Rhomboid 3.5e-19 27.9 136/146  
:BLT:SWISS 38->199 Y1372_MYCBO 1e-33 55.5 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55938.1 GT:GENE BAD55938.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1209248..1209940 GB:FROM 1209248 GB:TO 1209940 GB:DIRECTION + GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAD55938.1 LENGTH 230 SQ:AASEQ MGASFDPERIAALRARADGATTTTPSRPGRFAGVRQLWARAAVLIAGFVALLYGIEGVDSLDGKAQLDDAGIHPRELDGLWGILWAPVLHHGWDHLLANTLPVLVLGFLVLIAGILRGLAATAIIWVVAGLGTWLTGGSGTVHLGASALVFGWLTFLILRGWFARNLGQIVLGLVVLACYGSLLWGVLPGPDRISWQGHLFGAVGGVVAARTLAGRRRGAQAGPPAAARV GT:EXON 1|1-230:0| BL:SWS:NREP 1 BL:SWS:REP 38->199|Y1372_MYCBO|1e-33|55.5|155/240| TM:NTM 4 TM:REGION 38->60| TM:REGION 105->127| TM:REGION 142->164| TM:REGION 168->190| SEG 130->141|glgtwltggsgt| SEG 202->229|gavggvvaartlagrrrgaqagppaaar| HM:PFM:NREP 1 HM:PFM:REP 79->216|PF01694|3.5e-19|27.9|136/146|Rhomboid| RP:SCP:NREP 1 RP:SCP:REP 40->201|2ic8A1|2e-06|16.2|160/182|f.51.1.1| HM:SCP:REP 37->218|2nr9A1|4.3e-21|30.6|180/0|f.51.1.1|1/1|Rhomboid-like| OP:NHOMO 83 OP:NHOMOORG 81 OP:PATTERN -------------------------------------------------------------------- ----1111111--111111-11111111111-11111111----------------1---11-1111--11-----------------1111-------1-11-------------------------------------------2111111--11------11-1---1------------111-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2----1-----------------------------------------------------------1-1--111--------------------------------------------------------------------------11------------------------------------------------1------------------------------------------1------111-------------1----------1------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 1-4, 18-37, 214-230| PSIPRED ccccccHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccEEEHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccc //