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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55944.1
DDBJ      :             putative short chain dehydrogenase
Swiss-Prot:             

Homologs  Archaea  11/68 : Bacteria  256/915 : Eukaryota  191/199 : Viruses  0/175   --->[See Alignment]
c.2.1f.8.1
:291 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   13->137 1i01F PDBj 1e-09 31.2 %
:RPS:PDB   1->216 3ce6B PDBj 1e-20 11.2 %
:RPS:SCOP  12->216 1yb1A  c.2.1.2 * 3e-21 27.4 %
:RPS:SCOP  194->291 1preA2  f.8.1.1 * 8e-12 9.0 %
:HMM:SCOP  11->239 1n5dA_ c.2.1.2 * 8.1e-46 33.6 %
:RPS:PFM   14->138 PF00106 * adh_short 2e-13 40.8 %
:HMM:PFM   15->140 PF00106 * adh_short 5.2e-20 25.4 126/167  
:BLT:SWISS 13->287 RDH13_MOUSE 1e-35 37.4 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55944.1 GT:GENE BAD55944.1 GT:PRODUCT putative short chain dehydrogenase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1213295..1214170) GB:FROM 1213295 GB:TO 1214170 GB:DIRECTION - GB:PRODUCT putative short chain dehydrogenase GB:PROTEIN_ID BAD55944.1 LENGTH 291 SQ:AASEQ MAWNPTQIPDQTGRTFVITGANGGLGAETTKVLADKGATVVMACRNVAKAQQVADGIPGDVRVAELDLADLASVRAFAERAEEFDVLINNAGLMYIPFSRTADGFETQFGVNHLGHFALTGLLLDKIRDRVVTLASIAHRQTPKLWIDDLNYERRRYYRNLAYAQSKLANLMFARELQRRLAEAGSPKRSYAVHPGVSATELFARTETPLDRIAKPIIRLVGHPPAKAAHSTLFAATMPDADPGTYWGPNRLFQSQGPVEPSPSTRLSKNPELMRRLWAESERMTGVTYPV GT:EXON 1|1-291:0| BL:SWS:NREP 1 BL:SWS:REP 13->287|RDH13_MOUSE|1e-35|37.4|265/334| SEG 150->164|lnyerrryyrnlaya| BL:PDB:NREP 1 BL:PDB:REP 13->137|1i01F|1e-09|31.2|125/225| RP:PDB:NREP 1 RP:PDB:REP 1->216|3ce6B|1e-20|11.2|214/485| RP:PFM:NREP 1 RP:PFM:REP 14->138|PF00106|2e-13|40.8|125/169|adh_short| HM:PFM:NREP 1 HM:PFM:REP 15->140|PF00106|5.2e-20|25.4|126/167|adh_short| GO:PFM:NREP 2 GO:PFM GO:0008152|"GO:metabolic process"|PF00106|IPR002198| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00106|IPR002198| RP:SCP:NREP 2 RP:SCP:REP 12->216|1yb1A|3e-21|27.4|190/243|c.2.1.2| RP:SCP:REP 194->291|1preA2|8e-12|9.0|89/366|f.8.1.1| HM:SCP:REP 11->239|1n5dA_|8.1e-46|33.6|214/0|c.2.1.2|1/1|NAD(P)-binding Rossmann-fold domains| OP:NHOMO 2171 OP:NHOMOORG 458 OP:PATTERN ------------------------41121122--------------1-------------------11 1-3-5--1------99644-46114644444485655452-2-A51-2-22-111--3--221-8-5683------------1-----1111---------3-1-6-521-------------------11----211112---2-611111-121112312221121231131211131211111-----1------------------1--1------1-13----1-124------------------------11-----------------123----------------------------------1------------11---------------------------------------------3-2311------311-1---11113------------22122133211-211-11155111--1521111--1---11111111-341---1------------------------------2121--111-13334-1--------1111-1214---2----1--1----1-2111--------------------1-11------1------1-1------1232----------------------1---------1--1-3-1---------------1--1---------------1-------------------------------------1--------------------------------------------------------312----------------111121------1222--1-1--11-1-1-------------1-------1---1--1-------------11----------------------------------------1--1--------- 1-11653-52--333B8GAEDG8FFB94555565613333323334F5JZJNfaBDA883237121111221222211-123343411-5M588841113362641-7GMlKSHGM64534556C8273Fg8-6695233957B635433446A86688EKB9IDH6F8FO987H25A8*A86A9C77ICJGB4H79B3 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 291 STR:RPRED 100.0 SQ:SECSTR HHHHHHHHccccTTcEEEEEcccHHHHHHHHHHHHTTcEEEEEcccHHHHHHHHHTTHHHHGGGccEEEEcccccccccHHHHTTcEEEEccccGccHHHHHHTTcEEEEEETTEEEEEcTTTccEEEEccHHHHHcccccHHHHHHHHHHHHHHHHHHHHcGGGccccEEEccHHHHHHHHHHHHcEHHHTcccccccHHHHHHHTccTTcccccccHHHHHHHHHHHccTTcccccHHHHHHHHHccHHHHHHEEEEEEccccccTTccHHHHHHHHHHHHHHcccccE PSIPRED ccccHHHcccccccEEEEEccccHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHccccEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEcccHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEcccccccHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccEEEEcccEEccccccccccccHHHccHHHHHHHHHHHHHHHcccccc //