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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55945.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  14/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.121.1a.4.1
:215 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   20->78 3dcfB PDBj 4e-08 40.7 %
:RPS:PDB   16->78 2dt5A PDBj 5e-12 11.1 %
:RPS:SCOP  15->75 2fd5A1  a.4.1.9 * 3e-13 32.8 %
:HMM:SCOP  17->95 2fbqA1 a.4.1.9 * 1.1e-15 43.0 %
:HMM:SCOP  100->215 1vi0A2 a.121.1.1 * 6.7e-09 27.6 %
:RPS:PFM   26->70 PF00440 * TetR_N 5e-07 57.8 %
:HMM:PFM   26->70 PF00440 * TetR_N 1.5e-14 42.2 45/47  
:HMM:PFM   115->144 PF10293 * DUF2405 0.00047 30.0 30/158  
:BLT:SWISS 12->73 ACRR_SHIFL 7e-06 29.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55945.1 GT:GENE BAD55945.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1214295..1214942 GB:FROM 1214295 GB:TO 1214942 GB:DIRECTION + GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD55945.1 LENGTH 215 SQ:AASEQ MTTSVGRQYGGRAVAERKAERRLRFLDAATRLFAERGYTDCSLADVCAAAGLSKRQFYEEFETREDVLAAAYDRIQDEAADAVVGALAGVGRGRDPNTADPHTALTAVLTAYLESIGADPFRAKLAFIEVVGVSERMERHRRQRRHAWARLLESAVVPRIVPGGRVRGRSGLAAAALIGAINGLTHEWLLSDPRPPVDDLVALLVPVAVSLIETS GT:EXON 1|1-215:0| BL:SWS:NREP 1 BL:SWS:REP 12->73|ACRR_SHIFL|7e-06|29.0|62/215| SEG 79->95|aadavvgalagvgrgrd| SEG 135->150|ermerhrrqrrhawar| SEG 156->184|vvprivpggrvrgrsglaaaaligaingl| SEG 195->209|ppvddlvallvpvav| BL:PDB:NREP 1 BL:PDB:REP 20->78|3dcfB|4e-08|40.7|59/181| RP:PDB:NREP 1 RP:PDB:REP 16->78|2dt5A|5e-12|11.1|63/210| RP:PFM:NREP 1 RP:PFM:REP 26->70|PF00440|5e-07|57.8|45/47|TetR_N| HM:PFM:NREP 2 HM:PFM:REP 26->70|PF00440|1.5e-14|42.2|45/47|TetR_N| HM:PFM:REP 115->144|PF10293|0.00047|30.0|30/158|DUF2405| GO:PFM:NREP 2 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00440|IPR001647| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00440|IPR001647| RP:SCP:NREP 1 RP:SCP:REP 15->75|2fd5A1|3e-13|32.8|61/76|a.4.1.9| HM:SCP:REP 17->95|2fbqA1|1.1e-15|43.0|79/0|a.4.1.9|1/1|Homeodomain-like| HM:SCP:REP 100->215|1vi0A2|6.7e-09|27.6|116/0|a.121.1.1|1/1|Tetracyclin repressor-like, C-terminal domain| OP:NHOMO 22 OP:NHOMOORG 14 OP:PATTERN -------------------------------------------------------------------- ---------------------1--11------2---3223---------------------------21-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---1----------------1--------------------------1---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 121 STR:RPRED 56.3 SQ:SECSTR #########HHHHHccHHHHHHHHHHHHHHHHHHHTTccEEcHHHHHHHHTccHHHHHHHHHHTTccccTTTcEEHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHTcHHHHHHHHHHHH##################################################################################### DISOP:02AL 1-23| PSIPRED cccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcc //