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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55946.1
DDBJ      :             putative transporter
Swiss-Prot:             

Homologs  Archaea  36/68 : Bacteria  599/915 : Eukaryota  95/199 : Viruses  0/175   --->[See Alignment]
a.4.5f.38.1
:678 amino acids
:PSIPRED
:DISOPRED
:RPS:SCOP  4->197 1pw4A  f.38.1.1 * 1e-13 10.3 %
:HMM:SCOP  1->496 1pw4A_ f.38.1.1 * 1.1e-74 33.8 %
:HMM:SCOP  525->666 2hr3A1 a.4.5.28 * 5.6e-05 22.6 %
:RPS:PFM   23->498 PF06609 * TRI12 2e-24 26.1 %
:HMM:PFM   28->419 PF07690 * MFS_1 2.9e-53 32.1 343/353  
:BLT:SWISS 27->501 YUSP_BACSU 7e-52 31.6 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55946.1 GT:GENE BAD55946.1 GT:PRODUCT putative transporter GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1215009..1217045 GB:FROM 1215009 GB:TO 1217045 GB:DIRECTION + GB:PRODUCT putative transporter GB:PROTEIN_ID BAD55946.1 LENGTH 678 SQ:AASEQ MNGAVAVADAPDQPMSRARINVVFGTIVLGMLMAALDQTIVSTALPTIVADLGGAGHMAWVVTAYLLAEAVATALAGKLGDLFGRKLVFQLSGLIFIAGSMLAGLANGMLLLILARGVQGIGAGGLMVTSMALIADIIPLRERGKYQGALGAVFGVTTVVGPTLGGLFTDHAGWRWCFYVNVPLAILMILAAARTIPRVRAAAKPIVDYAGIGLVALGVSCLILGLEWGGQEYAWGSWQILGLFAAAVVLLAGFVAVESRAAEPMLPMRLFRSNVFTVCSILSFIVGFAMLGAMTYLPAYLQYVDGISATMSGVRTLPLVAGLFLTSIISGQVVGRTGRYRYFPIAGTAVMALGLLLMSTMGRETSTWLESLYMLILGLGIGLAMQVLTIVVQNTVPYADLGTATSGVTFFRTLGSAFGTAVFGTLYSNQLTPNLTAALTEVRVVSPEAAADPETLRGLPAEQAVPIIDAYAMSIEHVFRWVVPVALIGFVVAWFLKEVPLRDSARTAAGEVGEGFSAPQSADRADLLERTVAEALRRARAQGPVTPAILADAGGGMGRGEAWVLGQIALHTRLRGAARLSAIAAAHRLPEEVLEPFFARVAAAGQVEIGADEVRLTPAGEAQMDRVRAAWRRWLRERLQLADDGDPRDRELLEQALDVIANKLLDEQLHEPEAVAVH GT:EXON 1|1-678:0| BL:SWS:NREP 1 BL:SWS:REP 27->501|YUSP_BACSU|7e-52|31.6|474/541| TM:NTM 14 TM:REGION 23->45| TM:REGION 60->82| TM:REGION 90->112| TM:REGION 119->141| TM:REGION 148->170| TM:REGION 174->196| TM:REGION 208->229| TM:REGION 237->259| TM:REGION 273->295| TM:REGION 311->333| TM:REGION 342->364| TM:REGION 371->393| TM:REGION 416->438| TM:REGION 479->501| SEG 98->115|agsmlaglangmlllila| SEG 148->169|galgavfgvttvvgptlgglft| SEG 241->257|lglfaaavvllagfvav| SEG 375->383|lilglgigl| SEG 573->589|rlrgaarlsaiaaahrl| SEG 626->642|rvraawrrwlrerlqla| RP:PFM:NREP 1 RP:PFM:REP 23->498|PF06609|2e-24|26.1|467/526|TRI12| HM:PFM:NREP 1 HM:PFM:REP 28->419|PF07690|2.9e-53|32.1|343/353|MFS_1| RP:SCP:NREP 1 RP:SCP:REP 4->197|1pw4A|1e-13|10.3|194/434|f.38.1.1| HM:SCP:REP 1->496|1pw4A_|1.1e-74|33.8|400/447|f.38.1.1|1/1|MFS general substrate transporter| HM:SCP:REP 525->666|2hr3A1|5.6e-05|22.6|133/0|a.4.5.28|1/1|"Winged helix" DNA-binding domain| OP:NHOMO 3982 OP:NHOMOORG 730 OP:PATTERN ------7544444455-3111--1---------121--1--1-664221-211----11-14451--- 3153f32455534265677-7511B66666658768AKFB6I7N75324752685315--AC83839LMG3----211-13-2131112211-2-------21--6-1-2--------------111111-1111-6554421153--------------------1--3-------------3441---1729889899A95A9999851765899933435526566647K333333232133321633353572AC24423893398616435531----1-1-12---------------------------------1---78111212111133661332-----3--2-333331--23211----11-822311111249683126433211331333335-4444464939--A4438939AA3433-1----1111---4444444431113112-------------------------------342335346FJKILFD9898FFLHAA9A7DLDJ696D--658-132222338113---1-32----------1-2-1312-2--31113-1-12112-123225112----------------------11-5533412---21112222112433-1111-111-1----------45552634444455544-44444454444544444436A6563224314333233324243844254432-444444444444----34143----1-423111-21-22-1----44444121111-66665A35155532443111111111-1222222221111132444443221--------------------------------------------------1--------121 ----11-------14KGWDNMRSiklUJHDGDFYXLFMIJCKMB99VFDUSYhVFHNMJCBE456145451-7393221225554485-EF6G4B67449928788---------------------------------------------------------------------------------1-T--------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 1-18, 500-541, 673-678| PSIPRED ccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHccccccccccccHHHHHHHHccccccccHHHHHHHHHHHHccccccEEHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccEEEEcccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccccccc //