[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55947.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  37/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.5
:218 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   12->97 2eshA PDBj 6e-09 35.7 %
:RPS:PDB   14->97 2e1nB PDBj 7e-05 14.6 %
:RPS:SCOP  12->181 1yg2A  a.4.5.61 * 2e-11 19.0 %
:HMM:SCOP  10->185 1yg2A_ a.4.5.61 * 3.7e-29 36.6 %
:RPS:PFM   11->92 PF03551 * PadR 2e-08 41.2 %
:HMM:PFM   10->93 PF03551 * PadR 1.2e-17 30.5 82/86  
:BLT:SWISS 16->96 YX_BACSH 3e-05 34.6 %
:COIL

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55947.1 GT:GENE BAD55947.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1217097..1217753 GB:FROM 1217097 GB:TO 1217753 GB:DIRECTION + GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD55947.1 LENGTH 218 SQ:AASEQ MMPAKRKVDNLLALAILSVIAERPMHRYEIASKLRERGKDRDMDIKWGSLYTVVRNMVKAGFLEEVGSERQGGRPERVIYRITPAGQAEMTDWTKELLAEPRAERSAYTAGLSVTALLPPDEVAELLDARITALETIIAGVRAELDALAGTLPRLFLIETEYGLAMLEAEVAWTRGWRAELLDGTFPDLEMWRNIHAGGFTPGTAVAAVERGMHQSSS GT:EXON 1|1-218:0| BL:SWS:NREP 1 BL:SWS:REP 16->96|YX_BACSH|3e-05|34.6|78/100| COIL:NAA 29 COIL:NSEG 1 COIL:REGION 124->152| BL:PDB:NREP 1 BL:PDB:REP 12->97|2eshA|6e-09|35.7|84/114| RP:PDB:NREP 1 RP:PDB:REP 14->97|2e1nB|7e-05|14.6|82/112| RP:PFM:NREP 1 RP:PFM:REP 11->92|PF03551|2e-08|41.2|80/84|PadR| HM:PFM:NREP 1 HM:PFM:REP 10->93|PF03551|1.2e-17|30.5|82/86|PadR| RP:SCP:NREP 1 RP:SCP:REP 12->181|1yg2A|2e-11|19.0|158/169|a.4.5.61| HM:SCP:REP 10->185|1yg2A_|3.7e-29|36.6|172/0|a.4.5.61|1/1|"Winged helix" DNA-binding domain| OP:NHOMO 44 OP:NHOMOORG 37 OP:PATTERN -------------------------------------------------------------------- -1--2-------------------------------2121---1-2-----11-1--2------1--2--------------1------------------------------------------------------11-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-------------------------------------------------------------------------------------------------------------------------------------------------1111-1111111--11111121--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 96 STR:RPRED 44.0 SQ:SECSTR #ccccTTccHHHHHHHHHHHTTccEEHHHHHHHHHHHcHHTTEEccHHHHHHHHHHHHHTTcEEEEEEccTTccccEEEEEEccccccHHHHHHHHH######################################################################################################################### DISOP:02AL 1-9, 69-73, 214-218| PSIPRED ccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHccEEEcccccHHHHHHHHHHHcccEEEEEEEcccccccccEEEEcHHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccccHHHHHHHHHHHccccc //