[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55973.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  180/915 : Eukaryota  3/199 : Viruses  0/175   --->[See Alignment]
a.24.16a.4.1
:338 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   235->330 2k9sA PDBj 3e-05 29.2 %
:RPS:PDB   234->336 1bl0A PDBj 5e-12 17.5 %
:RPS:SCOP  254->331 1v4aA1  a.24.16.4 * 2e-08 12.8 %
:HMM:SCOP  283->332 1d5yA2 a.4.1.8 * 5.5e-09 28.0 %
:RPS:PFM   133->190 PF05053 * Menin 7e-04 38.9 %
:HMM:PFM   294->331 PF00165 * HTH_AraC 9.6e-08 29.7 37/42  
:BLT:SWISS 2->333 VIRS_MYCTU 2e-46 36.1 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55973.1 GT:GENE BAD55973.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1253311..1254327) GB:FROM 1253311 GB:TO 1254327 GB:DIRECTION - GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD55973.1 LENGTH 338 SQ:AASEQ MSVIRSAGLRGFRATVAELGGDAEEFAAAVGLPVAALDADDLLVPDQAVAAVLELAAHRLDRPDLGLRIARRQDLDMLGPLALAIRNSPTLAHVLECTSRYLFVHARSLSLEIEPDPHGERGVLALRYGVRPGLPTPVQGTDLGLGFVHRAIQRLVAPRYGLRSVELPYRPSAPAAAYEEFFGAPVRTGRPAALLRVPAELADRPLSGGDENLHRLALAFLAEQATETGAATAPKVRAAVQQLLGTTPPEIGVVARLLAMHPRTLQRSLAAEGTGFAAILDDVRRQQARRYLTTTTMPLAQVASLLGLAEQATLTRCCRRWWGRTPTQVRRAGLGAPT GT:EXON 1|1-338:0| BL:SWS:NREP 1 BL:SWS:REP 2->333|VIRS_MYCTU|2e-46|36.1|330/340| SEG 27->53|aaavglpvaaldaddllvpdqavaavl| SEG 222->233|aeqatetgaata| BL:PDB:NREP 1 BL:PDB:REP 235->330|2k9sA|3e-05|29.2|96/107| RP:PDB:NREP 1 RP:PDB:REP 234->336|1bl0A|5e-12|17.5|103/116| RP:PFM:NREP 1 RP:PFM:REP 133->190|PF05053|7e-04|38.9|54/571|Menin| HM:PFM:NREP 1 HM:PFM:REP 294->331|PF00165|9.6e-08|29.7|37/42|HTH_AraC| GO:PFM:NREP 1 GO:PFM GO:0005634|"GO:nucleus"|PF05053|IPR007747| RP:SCP:NREP 1 RP:SCP:REP 254->331|1v4aA1|2e-08|12.8|78/151|a.24.16.4| HM:SCP:REP 283->332|1d5yA2|5.5e-09|28.0|50/0|a.4.1.8|1/1|Homeodomain-like| OP:NHOMO 474 OP:NHOMOORG 183 OP:PATTERN -------------------------------------------------------------------- --------------2--33-32--2-333331-1112222--------------------1---1-1-------------------------------------11-1--------------------------------------1--1-----------------------------------------------------------1-11------------------1---------------------------------------------------------------------------------------------------------------------------------------------3---11------2-112-----11-11111-1-111-3-34-8---11--1111--21111-2-1-1-2----132111111111------1-------------------------------11-1-----6677662----7723111311B728D89--111---1-4-1131--2-------------1----1-2-1----------------------1-15-----------------------1---------9-2-11--------111----2--33---------------31--1-------------------------------1-23-------------------2------------------------------1111-77-1---------------7768833---1-65454873B36436312-------------------11111------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------1--------------------------1--2---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 103 STR:RPRED 30.5 SQ:SECSTR #########################################################################################################################################################################################################################################HHHHHHHHHHHTTcccccHHHHHHccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHTTcccHHHHHHHHHHHHcccHHHHHTccccc## DISOP:02AL 225-230, 330-338| PSIPRED cccccHHHHHHHHHHHHHccccHHHHHHHccccHHHcccccccccHHHHHHHHHHHHHHccccccHHHHccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccEEEEEEEccccEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHccccccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHccccc //