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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55977.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  2/68 : Bacteria  27/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.6.1d.131.1
:346 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   11->78 1r8eA PDBj 3e-09 39.7 %
:RPS:PDB   9->91 3d70A PDBj 3e-20 32.5 %
:RPS:PDB   144->342 2awaD PDBj 2e-10 12.6 %
:RPS:SCOP  9->91 1exiA1  a.6.1.3 * 7e-15 32.5 %
:RPS:SCOP  140->233 1jqjA1  d.131.1.1 * 8e-07 16.1 %
:RPS:SCOP  286->342 1vpkA3  d.131.1.1 * 4e-09 17.5 %
:HMM:SCOP  9->115 1jbgA_ a.6.1.3 * 2.7e-21 35.8 %
:HMM:SCOP  119->233 1vpkA2 d.131.1.1 * 3.7e-12 28.3 %
:HMM:SCOP  283->344 2polA3 d.131.1.1 * 0.00017 30.6 %
:HMM:PFM   11->49 PF00376 * MerR 3.9e-11 39.5 38/38  
:HMM:PFM   121->191 PF02767 * DNA_pol3_beta_2 1e-10 28.2 71/116  
:HMM:PFM   285->342 PF02768 * DNA_pol3_beta_3 4e-06 29.3 58/121  
:HMM:PFM   59->108 PF09278 * MerR-DNA-bind 6.9e-06 32.0 50/65  
:BLT:SWISS 11->75 YDFL_BACSU 3e-09 40.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55977.1 GT:GENE BAD55977.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1258508..1259548) GB:FROM 1258508 GB:TO 1259548 GB:DIRECTION - GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD55977.1 LENGTH 346 SQ:AASEQ MTETRDQGLLTIGAVARASGLTASALRFYGDCGLLAPAVVDEVTGYRYYTPEQCARAVLIRRLRGIELPLPEVAEVLDAGAARAGEVLDRHVAELARRAAAAAAVAGEVRQVLAVRGGVTVDAAGFARAVRQVVRAAVVDPEFPVLAGVLLEVDDTGVTVTATDRYRLSTRSVAPRRGVERSWSAVVEAGVLTAAVAETPGELVLAEDEGGVRIVTGAASRRLPGIAADFPDYRAVLAGLGPARTRVLLGRAPLLAALEAATAPVPLVVAGAGVALGGPVPVTLPATVTGTPLRLAFDPRVLRPAVEDALGPELMLDLTAPDQPVVLRSATDGDLTTLVMPVDPAH GT:EXON 1|1-346:0| BL:SWS:NREP 1 BL:SWS:REP 11->75|YDFL_BACSU|3e-09|40.0|65/270| SEG 92->110|vaelarraaaaaavagevr| SEG 123->139|aagfaravrqvvraavv| SEG 153->164|vddtgvtvtatd| SEG 247->285|vllgrapllaaleaatapvplvvagagvalggpvpvtlp| BL:PDB:NREP 1 BL:PDB:REP 11->78|1r8eA|3e-09|39.7|68/275| RP:PDB:NREP 2 RP:PDB:REP 9->91|3d70A|3e-20|32.5|83/276| RP:PDB:REP 144->342|2awaD|2e-10|12.6|199/374| HM:PFM:NREP 4 HM:PFM:REP 11->49|PF00376|3.9e-11|39.5|38/38|MerR| HM:PFM:REP 121->191|PF02767|1e-10|28.2|71/116|DNA_pol3_beta_2| HM:PFM:REP 285->342|PF02768|4e-06|29.3|58/121|DNA_pol3_beta_3| HM:PFM:REP 59->108|PF09278|6.9e-06|32.0|50/65|MerR-DNA-bind| RP:SCP:NREP 3 RP:SCP:REP 9->91|1exiA1|7e-15|32.5|83/118|a.6.1.3| RP:SCP:REP 140->233|1jqjA1|8e-07|16.1|93/122|d.131.1.1| RP:SCP:REP 286->342|1vpkA3|4e-09|17.5|57/123|d.131.1.1| HM:SCP:REP 9->115|1jbgA_|2.7e-21|35.8|106/106|a.6.1.3|1/1|Putative DNA-binding domain| HM:SCP:REP 119->233|1vpkA2|3.7e-12|28.3|113/0|d.131.1.1|1/1|DNA clamp| HM:SCP:REP 283->344|2polA3|0.00017|30.6|62/0|d.131.1.1|1/1|DNA clamp| OP:NHOMO 37 OP:NHOMOORG 29 OP:PATTERN ----------------------------------------------11-------------------- ----3----------------1---1------1-1-21-1-1-11-1-------1-1---21--12-231--------------------------------------------------------------------------1----1---------------------------------11-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1------------------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 285 STR:RPRED 82.4 SQ:SECSTR ########cEEHHHHHHHHTccHHHHHHHHHTTcccccEEcTTTccEEEcGGGGGHHHHHHHHHHHTccHHHHHHHTTccHHHHHHHHHHH#################################################cccTGGGEEEEEEETTTEEEEEEEccEEEEEEEEcccccccEEEEEEHHHHHHHHccTTccEEEEEEcccEEEEEcccEEEEEEccccccccccEEEEEHHHHHHHHHHHTTcTTccEEEEEETTEEEEEEEETTTEEEEEEccccEEEEccEEEEEcHHHHHHHHHTccccEEEEEEccTTccEEEEEccccccEEEEccc#### DISOP:02AL 1-8, 270-281, 345-346| PSIPRED cccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccccEEccHHHHHHHHHHHHHHHHcccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHEEccccccHHHEEEEEEEEccEEEEEEEccEEEEEEEEEccccccccEEEEEEcHHHHHHHHcccccEEEEEcccEEEEEEEEEEEEEEEEcccccccEEEcccccccEEEEEEEHHHHHHHHHHHccccEEEEEEcccccccEEEEEEEEEEEcccEEEEEccHHHHHHHHHccccEEEEEEEccccEEEEEEccccccEEEEEcccccc //