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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55978.1
DDBJ      :             putative cation transporter
Swiss-Prot:             

Homologs  Archaea  8/68 : Bacteria  478/915 : Eukaryota  182/199 : Viruses  0/175   --->[See Alignment]
d.52.9f.59.1
:351 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   253->330 3byrA PDBj 3e-12 19.5 %
:RPS:SCOP  60->254 2qfiA2  f.59.1.1 * 4e-17 17.0 %
:RPS:SCOP  256->330 2qfiA1  d.52.9.1 * 4e-13 20.3 %
:RPS:PFM   64->328 PF01545 * Cation_efflux 6e-39 36.6 %
:HMM:PFM   64->332 PF01545 * Cation_efflux 5.5e-68 33.1 269/285  
:HMM:PFM   8->82 PF02535 * Zip 9.4e-05 25.0 72/319  
:BLT:SWISS 57->330 CZCD_BACA2 6e-35 29.3 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55978.1 GT:GENE BAD55978.1 GT:PRODUCT putative cation transporter GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1259597..1260652) GB:FROM 1259597 GB:TO 1260652 GB:DIRECTION - GB:PRODUCT putative cation transporter GB:PROTEIN_ID BAD55978.1 LENGTH 351 SQ:AASEQ MAPTPGGHEHGHEHGGRRTGGQRNDDTANARTARAHTGHAHTGHDHAGHDHGVTAESDPRWLSIALALIVGFMAVEVVVGIIAQSLALITDAAHMLTDAAAIVLALVAIRLSRRPAAGAYTYGYKRAEILSAQANGITLLLLAAYFCYEGIHRLIEPPDVAGPLVLITALAGIAVNIAAAWCISHANRTSLNVEGAFQHILNDMYAFIGTAVAGAVVWLAGYPRADAVAALIVAALMVKAGWSLVRESGRIFLEAAPAHLDPDAIGARICAVPDVTEVHDLHVWTITSGEPSLSAHVLVDDRADCHGVRQAIENTLLGEFALAHTTLQIDHAAAPATAPHCAEPHGRTHRR GT:EXON 1|1-351:0| BL:SWS:NREP 1 BL:SWS:REP 57->330|CZCD_BACA2|6e-35|29.3|273/313| TM:NTM 6 TM:REGION 61->83| TM:REGION 90->112| TM:REGION 131->153| TM:REGION 161->183| TM:REGION 200->222| TM:REGION 225->247| SEG 3->21|ptpgghehghehggrrtgg| SEG 23->52|rnddtanartarahtghahtghdhaghdhg| SEG 99->109|aaaivlalvai| SEG 169->180|alagiavniaaa| SEG 225->240|adavaalivaalmvka| SEG 331->345|haaapataphcaeph| RP:PDB:NREP 1 RP:PDB:REP 253->330|3byrA|3e-12|19.5|77/89| RP:PFM:NREP 1 RP:PFM:REP 64->328|PF01545|6e-39|36.6|265/282|Cation_efflux| HM:PFM:NREP 2 HM:PFM:REP 64->332|PF01545|5.5e-68|33.1|269/285|Cation_efflux| HM:PFM:REP 8->82|PF02535|9.4e-05|25.0|72/319|Zip| GO:PFM:NREP 4 GO:PFM GO:0006812|"GO:cation transport"|PF01545|IPR002524| GO:PFM GO:0008324|"GO:cation transmembrane transporter activity"|PF01545|IPR002524| GO:PFM GO:0016020|"GO:membrane"|PF01545|IPR002524| GO:PFM GO:0055085|"GO:transmembrane transport"|PF01545|IPR002524| RP:SCP:NREP 2 RP:SCP:REP 60->254|2qfiA2|4e-17|17.0|194/204|f.59.1.1| RP:SCP:REP 256->330|2qfiA1|4e-13|20.3|74/82|d.52.9.1| OP:NHOMO 1128 OP:NHOMOORG 668 OP:PATTERN ------------------------1-----------------------1-1----111-11------- 111-1111111111111----11131-----1111142121--12113111131211-11222111111111111-------111---111---11----1-111-1----------------------11--121-----1-111-111----------------1-2---------------11--11121111111121-1111111-111111123211111111112212222222222222222211-1111111111111111---111111----------11111111111-------------1------------1---------------------------------------------11111113-----111121-311311-111-111112-22112131-11-------------2111-4-11-11--11111111111111-1-11111111-----------------1111-21111------------------11--------1---111-1-1--1111-1--21111-11-------1-1111-1-11-----------1111112-11111211-1111-11111----------1--1122---311-2211-----12----2---121----1---------11---11111-111111-1111-1111111111111111111--1111111111111111111111111--111111111111---211111111111-11---1-----------1111111-11--1112-1-1-11112------------2-------1------11112111111111----222222------------------------------------111-11-111--- 1111331-523-122111133322222121111222-11-1111-111232131-211211111111111121-12222212111221-111111132212-15321321C5557676441445A74B3MW9-A9G44529256435452645B3666313353322211-2222111-1---123117272--43231 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 77 STR:RPRED 21.9 SQ:SECSTR #############################################################################################################################################################################################################################################################cccccHHHHHHHHHHHHHHTTccEEEEEEEEEETTEEEEEEEEEEccTTcHHHHHHHHHHHHHHHHcTTEEEEEEEE##################### DISOP:02AL 1-2, 5-59, 339-351| PSIPRED ccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccEEEEEEEEccEEEEEEEEEEcccccHHHHHHHHHHHHHHHccccEEEEEEcccccccccccccccccccccc //