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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55980.1
DDBJ      :             hypothetical protein
Swiss-Prot:             

Homologs  Archaea  1/68 : Bacteria  596/915 : Eukaryota  8/199 : Viruses  0/175   --->[See Alignment]
d.110.3d.58.29
:425 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   148->250 3bwlD PDBj 1e-04 35.4 %
:BLT:PDB   274->412 3iclA PDBj 3e-18 37.7 %
:RPS:PDB   147->228 3bs2A PDBj 1e-06 12.3 %
:RPS:PDB   211->387 3btaA PDBj 9e-62 9.6 %
:RPS:SCOP  154->262 1p97A  d.110.3.7 * 1e-16 11.1 %
:RPS:SCOP  276->417 1w25A3  d.58.29.2 * 2e-27 32.4 %
:HMM:SCOP  130->258 1ew0A_ d.110.3.2 * 3.1e-26 31.5 %
:HMM:SCOP  276->417 1w25A3 d.58.29.2 * 2.2e-42 43.3 %
:RPS:PFM   157->261 PF08448 * PAS_4 3e-09 36.5 %
:RPS:PFM   273->417 PF00990 * GGDEF 3e-21 47.6 %
:HMM:PFM   271->417 PF00990 * GGDEF 1e-40 43.5 147/161  
:HMM:PFM   154->262 PF08448 * PAS_4 3.4e-20 27.1 107/110  
:HMM:PFM   92->150 PF09485 * CRISPR_Cse2 0.00045 26.0 50/147  
:BLT:SWISS 165->417 Y091_CAUCR 4e-25 36.7 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55980.1 GT:GENE BAD55980.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1261788..1263065 GB:FROM 1261788 GB:TO 1263065 GB:DIRECTION + GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAD55980.1 LENGTH 425 SQ:AASEQ MGLRELSLRWADALDGVVAPALTRTEIEAMLADLAELLVGAIRGRDEPDAAQGAAVMLVAANYRDPLAVSRTVRVICTDMVEDCCAREDPEFERCRARAVDVAAEFAAGFTGALRAVALAEQETTLGAALAAAQEAEARRQLSEARFEAVFAGASVGIGTIDVHGRVLEVNAAFAEMLGLPQERMPGRSVAELMGPANLGEAFVQMQRMLADEIRRFRIETHYMRPDGEVSVIDLSMSAVRDADGQVRFLIGVAVDVTERKQLADRLWHDANHDSLTGLPNRVLFFDRLAAAQAPIGICYLDLDGFKEINDRWGHSVGDGVLHDVARRLSAAVESWGLPARIGGDEFIVLVERCEGREQLDLLTRRLHAALLDPLDVLGQPVRVSASIGAVFSRERPAEVDELMRAADAAMYRDKHAAPRPGRRG GT:EXON 1|1-425:0| BL:SWS:NREP 1 BL:SWS:REP 165->417|Y091_CAUCR|4e-25|36.7|240/809| SEG 50->61|aaqgaavmlvaa| SEG 96->108|raravdvaaefaa| SEG 118->146|alaeqettlgaalaaaqeaearrqlsear| BL:PDB:NREP 2 BL:PDB:REP 148->250|3bwlD|1e-04|35.4|96/118| BL:PDB:REP 274->412|3iclA|3e-18|37.7|138/159| RP:PDB:NREP 2 RP:PDB:REP 147->228|3bs2A|1e-06|12.3|81/146| RP:PDB:REP 211->387|3btaA|9e-62|9.6|177/1277| RP:PFM:NREP 2 RP:PFM:REP 157->261|PF08448|3e-09|36.5|104/111|PAS_4| RP:PFM:REP 273->417|PF00990|3e-21|47.6|145/160|GGDEF| HM:PFM:NREP 3 HM:PFM:REP 271->417|PF00990|1e-40|43.5|147/161|GGDEF| HM:PFM:REP 154->262|PF08448|3.4e-20|27.1|107/110|PAS_4| HM:PFM:REP 92->150|PF09485|0.00045|26.0|50/147|CRISPR_Cse2| RP:SCP:NREP 2 RP:SCP:REP 154->262|1p97A|1e-16|11.1|108/114|d.110.3.7| RP:SCP:REP 276->417|1w25A3|2e-27|32.4|142/162|d.58.29.2| HM:SCP:REP 130->258|1ew0A_|3.1e-26|31.5|127/130|d.110.3.2|1/1|PYP-like sensor domain (PAS domain)| HM:SCP:REP 276->417|1w25A3|2.2e-42|43.3|141/0|d.58.29.2|1/1|Nucleotide cyclase| OP:NHOMO 7670 OP:NHOMOORG 605 OP:PATTERN -------------------------------------------1------------------------ D726B---111---15211-1H33-111111-C5556G75BDARk-------435-----A84-F4I5653---------A1788I34------------------1-1-----------------11--1---2-BBB99--184aQSFGH233BB---1--9E8-BCF3------------Q6B63761591777775672777777-23332776465E1GK3323239C-----------------------1--1-----------11--------------------------------------------------4C75G55533536384A675233646--66639DBDA683A7521452--B1979931111126VRO98GRNHPV3577367677G-SPMNP8NRBP41LQQOVWOVYbGFRG7GA391AB89784--------DCC3-ZBQ11111-------11111111111-1---1-A6D9489742ICDCFGD8887DDRZ999948HQQCLEO-2MLHaHZKNV12nA6SPPRKYZWJ-------55GNhl3FMECILN8dMKIN-KFLbCLFVN7767A6749563----------------LF6LD43bSFRXRiMaMgigfieeeUghiXgbVQWoj---BYDd------BFFC3J5CCCBCBBBDA-ACBDB79BCBBBBBCCBBEEFECE--1738877777777778695675468--D34444433444---P-----FGFGG9gDZ---------------8888839-1-GWONONXTVSYWUTSMPPS-----2---UCNOIPPOPOPVRklJKKKKKIDDG------Z29944BB--------518-------------------------5543468645-3- ----1---------------------------------------------------------------------------------------------------------------------------------------------------------2----2---------82----------1--8-----7---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 278 STR:RPRED 65.4 SQ:SECSTR ##################################################################################################################################################TcccEEEEccHHEEEEEEEEEccEcccTTTHHHHHHHHHHHHHHHHHHTTccHHHHHHHHHHHHcccEEEEEccccccTTEEEEEEEcccccGGGccccccccccccccccccTTTTccHHHHHHHHHHHHHHHHHHHTcHHHHHHHccccccTTccTTcccccGGGEEEEEcTTccEEEEEccEEEEEccccTTccEEEccccccccTTTccccccEEEEccccEEcEEccccGGGTcTTEEEEEEccccccTHHHHHHHHHHHHHHHTTH#cEEcHH DISOP:02AL 420-425| PSIPRED ccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEcccccEEEHHHHHHHHHcccHHHHccccHHHHcccccHHHHHHHHHHHHHccccEEEEEEEEEcccccEEEEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccEEEEEEEccccHHHHHHccHHHHHHHHHHHHHHHHHHcccccEEEEEEccEEEEEEcccccHHHHHHHHHHHHHHHHcccEEccEEEEEEEEEEEEEEccccccHHHHHHHHHHHHHHHHHHcccccccc //