Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55980.1
DDBJ : hypothetical protein
Swiss-Prot:
Homologs Archaea 1/68 : Bacteria 596/915 : Eukaryota 8/199 : Viruses 0/175 --->[See Alignment]
d.110.3
d.58.29
:425 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB 148->250 3bwlD PDBj 1e-04 35.4 %
:BLT:PDB 274->412 3iclA PDBj 3e-18 37.7 %
:RPS:PDB 147->228 3bs2A PDBj 1e-06 12.3 %
:RPS:PDB 211->387 3btaA PDBj 9e-62 9.6 %
:RPS:SCOP 154->262 1p97A d.110.3.7 * 1e-16 11.1 %
:RPS:SCOP 276->417 1w25A3 d.58.29.2 * 2e-27 32.4 %
:HMM:SCOP 130->258 1ew0A_ d.110.3.2 * 3.1e-26 31.5 %
:HMM:SCOP 276->417 1w25A3 d.58.29.2 * 2.2e-42 43.3 %
:RPS:PFM 157->261 PF08448 * PAS_4 3e-09 36.5 %
:RPS:PFM 273->417 PF00990 * GGDEF 3e-21 47.6 %
:HMM:PFM 271->417 PF00990 * GGDEF 1e-40 43.5 147/161
:HMM:PFM 154->262 PF08448 * PAS_4 3.4e-20 27.1 107/110
:HMM:PFM 92->150 PF09485 * CRISPR_Cse2 0.00045 26.0 50/147
:BLT:SWISS 165->417 Y091_CAUCR 4e-25 36.7 %
:SEG
SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55980.1
GT:GENE BAD55980.1
GT:PRODUCT hypothetical protein
GT:DATABASE GIB00210CH01
GT:ORG nfar0
GB:ACCESSION GIB00210CH01
GB:LOCATION 1261788..1263065
GB:FROM 1261788
GB:TO 1263065
GB:DIRECTION +
GB:PRODUCT hypothetical protein
GB:PROTEIN_ID BAD55980.1
LENGTH 425
SQ:AASEQ MGLRELSLRWADALDGVVAPALTRTEIEAMLADLAELLVGAIRGRDEPDAAQGAAVMLVAANYRDPLAVSRTVRVICTDMVEDCCAREDPEFERCRARAVDVAAEFAAGFTGALRAVALAEQETTLGAALAAAQEAEARRQLSEARFEAVFAGASVGIGTIDVHGRVLEVNAAFAEMLGLPQERMPGRSVAELMGPANLGEAFVQMQRMLADEIRRFRIETHYMRPDGEVSVIDLSMSAVRDADGQVRFLIGVAVDVTERKQLADRLWHDANHDSLTGLPNRVLFFDRLAAAQAPIGICYLDLDGFKEINDRWGHSVGDGVLHDVARRLSAAVESWGLPARIGGDEFIVLVERCEGREQLDLLTRRLHAALLDPLDVLGQPVRVSASIGAVFSRERPAEVDELMRAADAAMYRDKHAAPRPGRRG
GT:EXON 1|1-425:0|
BL:SWS:NREP 1
BL:SWS:REP 165->417|Y091_CAUCR|4e-25|36.7|240/809|
SEG 50->61|aaqgaavmlvaa|
SEG 96->108|raravdvaaefaa|
SEG 118->146|alaeqettlgaalaaaqeaearrqlsear|
BL:PDB:NREP 2
BL:PDB:REP 148->250|3bwlD|1e-04|35.4|96/118|
BL:PDB:REP 274->412|3iclA|3e-18|37.7|138/159|
RP:PDB:NREP 2
RP:PDB:REP 147->228|3bs2A|1e-06|12.3|81/146|
RP:PDB:REP 211->387|3btaA|9e-62|9.6|177/1277|
RP:PFM:NREP 2
RP:PFM:REP 157->261|PF08448|3e-09|36.5|104/111|PAS_4|
RP:PFM:REP 273->417|PF00990|3e-21|47.6|145/160|GGDEF|
HM:PFM:NREP 3
HM:PFM:REP 271->417|PF00990|1e-40|43.5|147/161|GGDEF|
HM:PFM:REP 154->262|PF08448|3.4e-20|27.1|107/110|PAS_4|
HM:PFM:REP 92->150|PF09485|0.00045|26.0|50/147|CRISPR_Cse2|
RP:SCP:NREP 2
RP:SCP:REP 154->262|1p97A|1e-16|11.1|108/114|d.110.3.7|
RP:SCP:REP 276->417|1w25A3|2e-27|32.4|142/162|d.58.29.2|
HM:SCP:REP 130->258|1ew0A_|3.1e-26|31.5|127/130|d.110.3.2|1/1|PYP-like sensor domain (PAS domain)|
HM:SCP:REP 276->417|1w25A3|2.2e-42|43.3|141/0|d.58.29.2|1/1|Nucleotide cyclase|
OP:NHOMO 7670
OP:NHOMOORG 605
OP:PATTERN -------------------------------------------1------------------------ D726B---111---15211-1H33-111111-C5556G75BDARk-------435-----A84-F4I5653---------A1788I34------------------1-1-----------------11--1---2-BBB99--184aQSFGH233BB---1--9E8-BCF3------------Q6B63761591777775672777777-23332776465E1GK3323239C-----------------------1--1-----------11--------------------------------------------------4C75G55533536384A675233646--66639DBDA683A7521452--B1979931111126VRO98GRNHPV3577367677G-SPMNP8NRBP41LQQOVWOVYbGFRG7GA391AB89784--------DCC3-ZBQ11111-------11111111111-1---1-A6D9489742ICDCFGD8887DDRZ999948HQQCLEO-2MLHaHZKNV12nA6SPPRKYZWJ-------55GNhl3FMECILN8dMKIN-KFLbCLFVN7767A6749563----------------LF6LD43bSFRXRiMaMgigfieeeUghiXgbVQWoj---BYDd------BFFC3J5CCCBCBBBDA-ACBDB79BCBBBBBCCBBEEFECE--1738877777777778695675468--D34444433444---P-----FGFGG9gDZ---------------8888839-1-GWONONXTVSYWUTSMPPS-----2---UCNOIPPOPOPVRklJKKKKKIDDG------Z29944BB--------518-------------------------5543468645-3- ----1---------------------------------------------------------------------------------------------------------------------------------------------------------2----2---------82----------1--8-----7---- -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
STR:NPRED 278
STR:RPRED 65.4
SQ:SECSTR ##################################################################################################################################################TcccEEEEccHHEEEEEEEEEccEcccTTTHHHHHHHHHHHHHHHHHHTTccHHHHHHHHHHHHcccEEEEEccccccTTEEEEEEEcccccGGGccccccccccccccccccTTTTccHHHHHHHHHHHHHHHHHHHTcHHHHHHHccccccTTccTTcccccGGGEEEEEcTTccEEEEEccEEEEEccccTTccEEEccccccccTTTccccccEEEEccccEEcEEccccGGGTcTTEEEEEEccccccTHHHHHHHHHHHHHHHTTH#cEEcHH
DISOP:02AL 420-425|
PSIPRED ccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEcccccEEEHHHHHHHHHcccHHHHccccHHHHcccccHHHHHHHHHHHHHccccEEEEEEEEEcccccEEEEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccEEEEEEEccccHHHHHHccHHHHHHHHHHHHHHHHHHcccccEEEEEEccEEEEEEcccccHHHHHHHHHHHHHHHHcccEEccEEEEEEEEEEEEEEccccccHHHHHHHHHHHHHHHHHHcccccccc
//
[GTOP]
