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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55982.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  23/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.121.1a.4.1
:215 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   35->165 3br5D PDBj 1e-06 13.1 %
:RPS:SCOP  35->88 2g3bA1  a.4.1.9 * 6e-04 25.9 %
:HMM:SCOP  14->87 2fd5A1 a.4.1.9 * 1.8e-11 29.7 %
:HMM:SCOP  92->207 2genA2 a.121.1.1 * 7.7e-06 18.6 %
:HMM:PFM   25->71 PF00440 * TetR_N 2.3e-09 38.3 47/47  
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55982.1 GT:GENE BAD55982.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1263680..1264327) GB:FROM 1263680 GB:TO 1264327 GB:DIRECTION - GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD55982.1 LENGTH 215 SQ:AASEQ MTRATTGTYRGASTAERREDRRRRLLDAALDIVGTNGLSALTVRGVCEQAKVGPRFFYEAFPDLDALAIALQLEVQNSALDSARTAIAVTAGTPAQRIRAGVAALITDLTDDPRRAHIVFAQAFGSEALMRSRFASMRTVAATIIEQTRVVLDLPEGQDAAVAATSQLITGGAAELVLVWLDGGLDVDREGLIDLLADFTIAMIERLPAVAVRLG GT:EXON 1|1-215:0| SEG 15->31|aerredrrrrlldaald| SEG 176->188|lvlvwldggldvd| RP:PDB:NREP 1 RP:PDB:REP 35->165|3br5D|1e-06|13.1|130/183| HM:PFM:NREP 1 HM:PFM:REP 25->71|PF00440|2.3e-09|38.3|47/47|TetR_N| RP:SCP:NREP 1 RP:SCP:REP 35->88|2g3bA1|6e-04|25.9|54/71|a.4.1.9| HM:SCP:REP 14->87|2fd5A1|1.8e-11|29.7|74/0|a.4.1.9|1/1|Homeodomain-like| HM:SCP:REP 92->207|2genA2|7.7e-06|18.6|113/0|a.121.1.1|1/1|Tetracyclin repressor-like, C-terminal domain| OP:NHOMO 33 OP:NHOMOORG 23 OP:PATTERN -------------------------------------------------------------------- --------------111----3--12-----1-1111334-------------------------1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1111111----------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 183 STR:RPRED 85.1 SQ:SECSTR ###############################HHHHHccTTccHHHHHHHHTccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHTTGGGcccHHHHHHHHHHHHHHccccTTTHHHHHHHHHHHTcHHHHHHHHHHHHHHHHHHHHHHHTTccccccHHHHHHHHHHHHHHHHHHHHHHHHHHTTcccHHHHHHHHHHHHHHHHHHHTTTTcc# DISOP:02AL 1-21| PSIPRED cccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHc //