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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55985.1
DDBJ      :             hypothetical protein
Swiss-Prot:             

Homologs  Archaea  5/68 : Bacteria  109/915 : Eukaryota  7/199 : Viruses  0/175   --->[See Alignment]
e.65.1
:480 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   60->471 2p3yA PDBj 2e-05 24.7 %
:RPS:PDB   49->226 3cmbB PDBj 4e-20 9.3 %
:RPS:SCOP  60->475 2p3yA1  e.65.1.1 * 2e-56 21.3 %
:RPS:PFM   62->180 PF06863 * DUF1254 3e-17 47.8 %
:RPS:PFM   381->465 PF06742 * DUF1214 1e-14 50.6 %
:HMM:PFM   61->180 PF06863 * DUF1254 4.6e-41 50.0 114/118  
:HMM:PFM   376->464 PF06742 * DUF1214 6.3e-28 50.0 86/87  
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55985.1 GT:GENE BAD55985.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1266156..1267598 GB:FROM 1266156 GB:TO 1267598 GB:DIRECTION + GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAD55985.1 LENGTH 480 SQ:AASEQ MREQRRPGGPALSRRTVLSAGAALAVFGATAVFGATAGCGRSERVTERPPSGEDPRTIVSDAYVFGYPLVLMDATRRVARASTPDNQFRHAAGLPTPRRRGPVRPNMDTLYSIAWLDLSAGPMVVQMPEVEPQRYWVLQLLDAWTNTVHNPGNLRPRVAAGAAPPYTYVVTGPGWTGELPPDLVVLPMPTPMVWLLGRIQVDGPEDVPAVRAIQERMRLVPLADWPAGRDPGPGRTDTGDGDVPPVQQVAAMDPAEFFERLCALMAVNPPAPADGPALARFAQLGIAPGGALTGISDDDLAEAVQAVRHTIEVYVDPGIRIDNGWLVDPNIGVYGDDYLRRASTAAKGLGANRPESAAYPTLFAAADDDGIPTRYRLTFAPGQAPPVDAFWSVTAYDGDGFLVPNDAEIYSVGHRIPVPPAPDGSLVLVIQHADPGPGVPAGSWLPIPDRGTFSLTLRLYAPRTEVLDGSWHPPPLVPVP GT:EXON 1|1-480:0| SEG 20->38|agaalavfgatavfgatag| SEG 228->242|grdpgpgrtdtgdgd| BL:PDB:NREP 1 BL:PDB:REP 60->471|2p3yA|2e-05|24.7|377/447| RP:PDB:NREP 1 RP:PDB:REP 49->226|3cmbB|4e-20|9.3|162/259| RP:PFM:NREP 2 RP:PFM:REP 62->180|PF06863|3e-17|47.8|113/118|DUF1254| RP:PFM:REP 381->465|PF06742|1e-14|50.6|83/87|DUF1214| HM:PFM:NREP 2 HM:PFM:REP 61->180|PF06863|4.6e-41|50.0|114/118|DUF1254| HM:PFM:REP 376->464|PF06742|6.3e-28|50.0|86/87|DUF1214| RP:SCP:NREP 1 RP:SCP:REP 60->475|2p3yA1|2e-56|21.3|395/461|e.65.1.1| OP:NHOMO 201 OP:NHOMOORG 121 OP:PATTERN -------------------------------------------14--1--11---------------- --1-----------1------2--11-----121112311-112----------------1----------------------------------------1--------------------------------------------1111------1--------------------------------------------------------------------1112111------------------------------------------------------------------------------------------------------------------------------------------------1111-----2-3--2--1-1-1------------1-2-12----2------1-53-2512----------1-------------------------------------------------2---143-21111111111111411111-12116946--111-----2----1-12-------------------2-----1--3------------------1------------------------------------1------------1--------2---------------------------------------------------------------------------------------------------------------------------------------------------2-11-2--1-------------134-------1---------------------------------------------------------------------------- -----------------------2-11----------------------11---------------------------------------------------------2-------------------------------------------------------------------------------4---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 403 STR:RPRED 84.0 SQ:SECSTR ################################################EccHHHHHTTccTTEEEcccEEEEEEEEEEEEGGGEEEEEEccccEEEEEEEEEEEEccHHHHHHHHHHHcccEEEcEEcccEEETTEEEEEEEETccEEEEEETTcTTTETTEEEEEEEEEEEEccHHHHHHHHHHHHcEEEEEEEEEcTTcccEEEEEEEEEEEcEEEEEEEEEEEccccE#############EcEEcccccHHHHHHHHHHHHHHccccGGGH#HHHHHGGGTccTTccccccHHHHHHHHHHHHHHH#cTTcccccTTcc#ccccccTTccccccHHHcccccGGGcccTTccEEEEEEcccTTcccccTTccEEEEEcccccEEEEEEEEEEETTTccccccccccEEETTccccccTTcc#EEEEEcccccTTc#TTcccccTTccEEEE#EEEEEE#cHHHTccc######### DISOP:02AL 1-14| PSIPRED ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEcccccccccccccccccccEEEEEEEEcccccEEEEccccccccEEEEEEEEccccEEEEcccccccccccccccEEEEEEcccccccccccEEEEEccccEEEEEEEEEEcccccHHHHHHHHHccEEEEccccccccccccccccccccccccHHHHccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHcccccccEEEEEEEcccccccccEEEEEEccccccccccEEEEEEEccccccccccccccccccccccEEcccccEEEEEEccccccccccccEEEccccccEEEEEEEEcccHHHHcccEEccccEEcc //