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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55988.1
DDBJ      :             hypothetical protein
Swiss-Prot:             

Homologs  Archaea  7/68 : Bacteria  268/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
c.1.32
:279 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   29->113 1ztvB PDBj 4e-06 35.3 %
:RPS:SCOP  3->258 1vpqA  c.1.32.1 * 8e-30 24.1 %
:HMM:SCOP  1->258 1vpyA_ c.1.32.1 * 2.3e-64 37.1 %
:RPS:PFM   20->137 PF01904 * DUF72 3e-23 55.9 %
:HMM:PFM   18->255 PF01904 * DUF72 6.9e-58 39.5 215/230  
:BLT:SWISS 3->258 YECE_ECO57 8e-41 35.3 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55988.1 GT:GENE BAD55988.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1269617..1270456 GB:FROM 1269617 GB:TO 1270456 GB:DIRECTION + GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAD55988.1 LENGTH 279 SQ:AASEQ MRLHVGCAMWTHPAWQDRQMPSAQRLRWYAERCDAVEGNTTFYAIPSPGTVRSWAQQTGPDFRFVAKLPRAITHERRLTGAAAELGAFLDVLAPLGPRLHTVWIQLPASFGPTDLGALAAFLRTLPAGPCRAVEVRHRAFFDDERAAAALERVLDRAGAEWTIFDTTVLFGAPPRGPAEQEAWAKKPRVPRRTRALTAHPMVRYHGRDDPAETVAGWQPWLPVVAGWLREGRSPTVFVHTPDNAGALDLARRFHTEVRALVPELDPLPEPVDSEPMTLF GT:EXON 1|1-279:0| BL:SWS:NREP 1 BL:SWS:REP 3->258|YECE_ECO57|8e-41|35.3|252/272| SEG 138->157|raffdderaaaalervldra| SEG 260->275|lvpeldplpepvdsep| BL:PDB:NREP 1 BL:PDB:REP 29->113|1ztvB|4e-06|35.3|85/275| RP:PFM:NREP 1 RP:PFM:REP 20->137|PF01904|3e-23|55.9|118/229|DUF72| HM:PFM:NREP 1 HM:PFM:REP 18->255|PF01904|6.9e-58|39.5|215/230|DUF72| RP:SCP:NREP 1 RP:SCP:REP 3->258|1vpqA|8e-30|24.1|245/260|c.1.32.1| HM:SCP:REP 1->258|1vpyA_|2.3e-64|37.1|240/0|c.1.32.1|1/1|TM1631-like| OP:NHOMO 321 OP:NHOMOORG 277 OP:PATTERN ---1--1-------------1-------------------------1--------------121---- 122-1----------11---------------11112111111111-1----111-1---111-1-111-------------21---1--------1--1---1-32312--------------------------11111---121--1-----11------1--1112-------------1-1---------------------------------------11-11---------------------------------------------------------------------------------------------1---------------------------------------------11---111--1-----111111-1-2-11------------11--1--11-1--11211--22--21------1111---11111111-11-------------------------------------11----------1-1-------1-------1111----------11-1--2-----1-----------------11-1-----------222-1-1--2121--1------------------------111111-1----11-11111-1-1111----1---------------11111111111111111-111111111111111111111111---11111111111111111-------1-111111111111---------------111-------------------------1-22221221112112112-------------111111111111-33333----------------------------------------------------------------2- ------1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1----- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 85 STR:RPRED 30.5 SQ:SECSTR ############################HTTTccEEEEcHHHHccccHHHHHHHHHHcccccEEEEEccTTTTTcccGGTcccHHHHHHHHcHHHTTcEEEEEEEccTTcccc###################################################################################################################################################################### PSIPRED cEEEEEccccccHHHccccccccHHHHHHHHHccEEEEcccccccccHHHHHHHHHHccccEEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHccEEEEEcccccccccHHHHHHHHHHccccccEEEEEccHHHccHHHHHHHHHHHHHHHccEEEEcccccccccccccHHHHccccccccccEEEEccccEEEEEEEccccccccHHHHHHHHHHHHHHHHccccEEEEEEcccccccHHHHHHHHHHHHHHccccccccccccccccccc //