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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55989.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  21/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.121.1a.4.1
:220 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   32->107 1ui6B PDBj 1e-07 44.1 %
:RPS:PDB   32->130 3br5D PDBj 5e-13 19.8 %
:RPS:SCOP  32->99 1z77A1  a.4.1.9 * 2e-12 25.0 %
:HMM:SCOP  30->101 1vi0A1 a.4.1.9 * 7.8e-13 27.8 %
:HMM:SCOP  105->222 1rktA2 a.121.1.1 * 0.00027 16.9 %
:RPS:PFM   46->75 PF00440 * TetR_N 3e-05 56.7 %
:HMM:PFM   35->80 PF00440 * TetR_N 2e-15 34.8 46/47  
:BLT:SWISS 32->75 YXBF_BACSU 2e-05 43.2 %
:BLT:SWISS 47->97 YCFQ_ECOLI 4e-04 37.3 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55989.1 GT:GENE BAD55989.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1270534..1271196) GB:FROM 1270534 GB:TO 1271196 GB:DIRECTION - GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD55989.1 LENGTH 220 SQ:AASEQ MRPPTTQRESLSDSEFADRHRAVREAVLTSPRGRLIAAIVDCVETKGYPATTLSDIVARARVSRSTFYEHFANKEHCFVEAVHAGIDILAARINGELAQLPRDADPRAKIASVITTFCETVAAEPGFARLVLVEAFRVERAAEAVRNRAVDRFTDLYRHFHAVARAGDPSVPPVSAELISLIPDAVGERTRRLILTEGPEAVPRSAPLFIAFTTTVLGLD GT:EXON 1|1-220:0| BL:SWS:NREP 2 BL:SWS:REP 32->75|YXBF_BACSU|2e-05|43.2|44/380| BL:SWS:REP 47->97|YCFQ_ECOLI|4e-04|37.3|51/210| SEG 131->152|vlveafrveraaeavrnravdr| BL:PDB:NREP 1 BL:PDB:REP 32->107|1ui6B|1e-07|44.1|68/194| RP:PDB:NREP 1 RP:PDB:REP 32->130|3br5D|5e-13|19.8|96/183| RP:PFM:NREP 1 RP:PFM:REP 46->75|PF00440|3e-05|56.7|30/47|TetR_N| HM:PFM:NREP 1 HM:PFM:REP 35->80|PF00440|2e-15|34.8|46/47|TetR_N| GO:PFM:NREP 2 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00440|IPR001647| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00440|IPR001647| RP:SCP:NREP 1 RP:SCP:REP 32->99|1z77A1|2e-12|25.0|68/75|a.4.1.9| HM:SCP:REP 30->101|1vi0A1|7.8e-13|27.8|72/0|a.4.1.9|1/1|Homeodomain-like| HM:SCP:REP 105->222|1rktA2|0.00027|16.9|118/0|a.121.1.1|1/1|Tetracyclin repressor-like, C-terminal domain| OP:NHOMO 24 OP:NHOMOORG 21 OP:PATTERN -------------------------------------------------------------------- ----1----------1111-12--1111111121112------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 195 STR:RPRED 88.6 SQ:SECSTR #################cHHHHHHTccHHHHcHHHHHHHHHHHHHHccTTccHHHHHHHHTccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHTTGGGcccHHHHHHHHHHHHHHccccTTTHHHHHHHHTccccTTTTTTTHHHHHHHHHHHHHHHHHHHHcTTccccccHHHHHHHHHHHHHHHHHTTccccHHHHHHHHHHHHHH######## DISOP:02AL 1-33| PSIPRED cccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcc //